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SCNpilot_expt_1000_bf_scaffold_1197_curated

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1197_curated_1
unknown

Not on your lists

comp(1..180)
DNA (180bp) protein (60aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1197_curated_2
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

263..568
DNA (306bp) protein (102aa)
transposase IS3 n=1 Tax=Pseudoclavibacter faecalis RepID=UPI000376B816
Putative transposase {ECO:0000313|EMBL:GAC86327.1}; TaxID=1223543 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
transposase
SCNpilot_expt_1000_bf_scaffold_1197_curated_3
Gordonia paraffinivorans, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

695..1438
DNA (744bp) protein (248aa)
Putative transposase n=1 Tax=Gordonia paraffinivorans NBRC 108238 RepID=M3VGV6_9ACTO
Putative transposase {ECO:0000313|EMBL:GAC86328.1}; TaxID=1223543 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia paraffinivorans NBRC 108238.;"
Integrase catalytic region
SCNpilot_expt_1000_bf_scaffold_1197_curated_4
Rhodococcus rhodnii, Rhodococcus, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

1503..2063
DNA (561bp) protein (187aa)
Alpha-ketoglutarate transporter n=1 Tax=Rhodococcus rhodnii LMG 5362 RepID=R7WHE5_9NOCA
Alpha-ketoglutarate transporter {ECO:0000313|EMBL:EOM74521.1}; TaxID=1273125 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Rhodococcus.;" source="Rhodococcus rhodnii LMG 5362.;"
Membrane transporter
SCNpilot_expt_1000_bf_scaffold_1197_curated_5
Arthrobacter chlorophenolicus, Arthrobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2018..3022)
DNA (1005bp) protein (335aa)
Transcriptional regulator, LacI family n=1 Tax=Arthrobacter chlorophenolicus (strain A6 / ATCC 700700 / DSM 12829 / JCM 12360) RepID=B8HFU1_ARTCA
LacI family transcriptional regulator; K02529 LacI family transcriptional regulator
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ACL41134.1}; TaxID=452863 species="Bacteria; Actinobacteria; Micrococcales; Micrococcaceae; Arthrobacter.;" source="Arthrobacter chlorophenolicus (strain ATCC 700700 / DSM 12829 / JCM; 12360 / NCIMB 13794 / A6).;"
SCNpilot_expt_1000_bf_scaffold_1197_curated_6
Streptomyces bingchenggensis, Streptomyces, Streptomycetales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3112..4311)
DNA (1200bp) protein (400aa)
oxidoreductase n=1 Tax=Streptomyces sp. R1-NS-10 RepID=UPI00037B39EB
putative oxidoreductase
Putative oxidoreductase {ECO:0000313|EMBL:ADI07236.1}; TaxID=749414 species="Bacteria; Actinobacteria; Streptomycetales; Streptomycetaceae; Streptomyces.;" source="Streptomyces bingchenggensis (strain BCW-1).;"
SCNpilot_expt_1000_bf_scaffold_1197_curated_7
Actinoplanes utahensis, Actinoplanes, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4552..5946
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Microbacterium yannicii RepID=UPI000300E62E
Bicyclomycin resistance protein {ECO:0000313|EMBL:KHD78783.1}; TaxID=1869 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Actinoplanes.;" source="Actinoplanes utahensis.;"
extracellular solute-binding protein family 1 protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_8
Kribbella flavida, Kribbella, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6034..7044
DNA (1011bp) protein (337aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399) RepID=D2Q0T8_KRIFD
binding-protein-dependent transport systems inner membrane component; K02025 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADB33888.1}; TaxID=479435 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Kribbella.;" source="Kribbella flavida (strain DSM 17836 / JCM 10339 / NBRC 14399).;"
SCNpilot_expt_1000_bf_scaffold_1197_curated_9
Micromonospora sp. M42, Micromonospora, Micromonosporales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7041..7931
DNA (891bp) protein (297aa)
Binding-protein-dependent transport systems inner membrane component n=2 Tax=Micromonospora RepID=D9T986_MICAI
Inner membrane ABC transporter permease protein YcjP {ECO:0000313|EMBL:EWM64063.1}; TaxID=457406 species="Bacteria; Actinobacteria; Micromonosporales; Micromonosporaceae; Micromonospora.;" source="Micromonospora sp. M42.;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_10
Microbacterium sp. TS-1, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

7938..9035
DNA (1098bp) protein (366aa)
leuB; isocitrate/isopropylmalate dehydrogenase; K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85]
3-isopropylmalate dehydrogenase n=1 Tax=Microbacterium sp. TS-1 RepID=U2XIU1_9MICO
3-isopropylmalate dehydrogenase {ECO:0000313|EMBL:GAD33130.1}; TaxID=1344956 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. TS-1.;"
SCNpilot_expt_1000_bf_scaffold_1197_curated_11
Microbacterium mangrovi, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

9531..10223
DNA (693bp) protein (231aa)
transposase n=1 Tax=Curtobacterium ginsengisoli RepID=UPI0003B63013
Transposase {ECO:0000313|EMBL:KHK95186.1}; TaxID=1348253 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium mangrovi.;"
tnp; IS1245 transposase rbh
SCNpilot_expt_1000_bf_scaffold_1197_curated_12
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

11058..12428
DNA (1371bp) protein (457aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0003052AEA
Peptidase M23 {ECO:0000313|EMBL:KDA05405.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_13
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

comp(12501..12992)
DNA (492bp) protein (164aa)
ppa; inorganic pyrophosphatase; K01507 inorganic pyrophosphatase [EC:3.6.1.1]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002D7937A
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1197_curated_14
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13255..14244
DNA (990bp) protein (330aa)
tRNA(Ile)-lysidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; EC=6.3.4.19 {ECO:0000256|HAMAP-Rule:MF_01161};; tRNA(Ile)-2-lysyl-cytidine synthase {ECO:0000256|HAMAP-Rule:MF_01161}; tRNA(Ile)-lysidine synthetase {ECO:0000256|HAMAP-Rule:MF_01161}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
ATPase PP-loop; K04075 tRNA(Ile)-lysidine synthase [EC:6.3.4.19]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034909CF
SCNpilot_expt_1000_bf_scaffold_1197_curated_15
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15060..15611
DNA (552bp) protein (184aa)
Hypoxanthine-guanine phosphoribosyltransferase {ECO:0000313|EMBL:KJL21386.1}; EC=2.4.2.8 {ECO:0000313|EMBL:KJL21386.1};; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypoxanthine-guanine phosphoribosyltransferase; K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
hypoxanthine phosphoribosyltransferase n=1 Tax=Microbacterium barkeri RepID=UPI0002E47D4F
SCNpilot_expt_1000_bf_scaffold_1197_curated_16
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15746..17746
DNA (2001bp) protein (667aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
ftsH; ATP-dependent Zn protease; K03798 cell division protease FtsH [EC:3.4.24.-]
cell division protein FtsH n=1 Tax=Microbacterium barkeri RepID=UPI000319CC0D
SCNpilot_expt_1000_bf_scaffold_1197_curated_17
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

17748..18359
DNA (612bp) protein (204aa)
GTP cyclohydrolase 1 {ECO:0000256|HAMAP-Rule:MF_00223}; EC=3.5.4.16 {ECO:0000256|HAMAP-Rule:MF_00223};; GTP cyclohydrolase I {ECO:0000256|HAMAP-Rule:MF_00223}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
folE; GTP cyclohydrolase I; K01495 GTP cyclohydrolase I [EC:3.5.4.16]
GTP cyclohydrolase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003480379
SCNpilot_expt_1000_bf_scaffold_1197_curated_18
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

18356..19165
DNA (810bp) protein (270aa)
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
dihydropteroate synthase; K00796 dihydropteroate synthase [EC:2.5.1.15]
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034B164F
SCNpilot_expt_1000_bf_scaffold_1197_curated_19
BJP_08E140C01_10KDA_Microbacterium_68_10, Microbacterium, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

Not on your lists

19167..19538
DNA (372bp) protein (124aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031D59F3
putative dihydroneopterin aldolase
Tax=BJP_08E140C01_10KDA_Microbacterium_68_10
SCNpilot_expt_1000_bf_scaffold_1197_curated_20
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19544..20077
DNA (534bp) protein (178aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase {ECO:0000313|EMBL:KJL19241.1}; EC=2.7.6.3 {ECO:0000313|EMBL:KJL19241.1};; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase; K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002E07B7E
SCNpilot_expt_1000_bf_scaffold_1197_curated_21
Microbacterium maritypicum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20074..20538
DNA (465bp) protein (155aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI00031815B2
Uncharacterized protein {ECO:0000313|EMBL:EQM86877.1}; TaxID=1333857 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium maritypicum MF109.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_22
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20507..21217
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Microbacterium barkeri RepID=UPI0002F1F373
Uncharacterized protein {ECO:0000313|EMBL:KDA05394.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein; K09167 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_23
Microbacterium foliorum, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21214..23091
DNA (1878bp) protein (626aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI0003496D74
Bacterial membrane flanked domain protein {ECO:0000313|EMBL:KJL19240.1}; TaxID=104336 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium foliorum.;"
hypothetical protein; K08981 putative membrane protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_24
Microbacterium sp. CH12i, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

23094..23792
DNA (699bp) protein (233aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034CBDF8
Oxidoreductase {ECO:0000313|EMBL:KDA05393.1}; TaxID=1479651 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. CH12i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_25
Microbacterium sp. SA39, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23980..25740)
DNA (1761bp) protein (587aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5KT70_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJQ53404.1}; TaxID=1263625 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. SA39.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_26
Microbacterium sp. UCD-TDU, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25889..27409
DNA (1521bp) protein (507aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1247714 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. UCD-TDU.;"
lysS; lysyl-tRNA synthetase (class II); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6]
lysyl-tRNA synthetase n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI00034C9DFA
SCNpilot_expt_1000_bf_scaffold_1197_curated_27
Leucobacter sp. UCD-THU, Leucobacter, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27426..28604
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Leucobacter sp. UCD-THU RepID=UPI0003797DFC
Colicin V production protein {ECO:0000313|EMBL:EYT52174.1}; TaxID=1292023 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Leucobacter.;" source="Leucobacter sp. UCD-THU.;"
peptidase S1 and S6 chymotrypsin/Hap
SCNpilot_expt_1000_bf_scaffold_1197_curated_28
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28615..29751)
DNA (1137bp) protein (379aa)
hypothetical protein n=1 Tax=Microbacterium sp. UCD-TDU RepID=UPI000349CC9D
Uncharacterized protein {ECO:0000313|EMBL:KJL29615.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
lipopolysaccharide biosynthesis protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_29
Microbacterium oxydans, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29777..30055
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Microbacterium maritypicum MF109 RepID=T5L8G6_9MICO
Uncharacterized protein {ECO:0000313|EMBL:KJL29616.1}; TaxID=82380 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium oxydans.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1197_curated_30
Microbacterium sp. MEJ108Y, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30152..31615
DNA (1464bp) protein (488aa)
cls; phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase; K06131 cardiolipin synthase [EC:2.7.8.-]
cardiolipin synthase n=1 Tax=Microbacterium barkeri RepID=UPI0002F5B9FE
Contig_4, whole genome shotgun sequence {ECO:0000313|EMBL:KIP94954.1}; TaxID=1587523 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. MEJ108Y.;"
Displaying items 1-30 of 48 in total

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