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SCNpilot_cont_300_bf_scaffold_436_curated

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Displaying items 1-30 of 46 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_436_curated_1
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..505
DNA (504bp) protein (168aa)
Putative ATP-dependent exoDNAse n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESN8_BRASB
ATP-dependent exoDNAse
Putative ATP-dependent exoDNAse {ECO:0000313|EMBL:ABQ39182.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_300_bf_scaffold_436_curated_2
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

495..749
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESN9_BRASB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABQ39183.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_300_bf_scaffold_436_curated_3
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

749..1414
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZH67_9BRAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAM93153.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_cont_300_bf_scaffold_436_curated_4
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1392..1820
DNA (429bp) protein (143aa)
Uncharacterized protein n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XKR6_METNJ
hypothetical protein
Tax=GWD2_Desulfuromonadales_61_12_curated
SCNpilot_cont_300_bf_scaffold_436_curated_5
Nitrobacter winogradskyi, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1872..2105
DNA (234bp) protein (78aa)
Resolvase n=1 Tax=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) RepID=Q3SMY5_NITWN
resolvase
Resolvase {ECO:0000313|EMBL:ABA06356.1}; TaxID=323098 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391).;"
SCNpilot_cont_300_bf_scaffold_436_curated_6
Bradyrhizobium sp. BTAi1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2109..3650
DNA (1542bp) protein (514aa)
Putative resolvase n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5ESP2_BRASB
resolvase
Putative resolvase {ECO:0000313|EMBL:ABQ39186.1}; TaxID=288000 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182).;"
SCNpilot_cont_300_bf_scaffold_436_curated_7
GWA2_Bacteroidetes_31_9b_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(4010..5047)
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002E0D462
hypothetical protein
Tax=GWA2_Bacteroidetes_31_9b_curated
SCNpilot_cont_300_bf_scaffold_436_curated_8
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5050..5268)
DNA (219bp) protein (73aa)
ATPase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318A22C
ATPase; K06915
ATPase protein {ECO:0000313|EMBL:ACM35465.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_300_bf_scaffold_436_curated_9
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5271..7178)
DNA (1908bp) protein (636aa)
ATPase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI000318A22C
ATPase; K06915
ATPase protein {ECO:0000313|EMBL:ACM35465.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_300_bf_scaffold_436_curated_10
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7168..8367)
DNA (1200bp) protein (400aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D6538D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM35464.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_cont_300_bf_scaffold_436_curated_11
Desulfovibrio sp. U5L, Desulfovibrio, Desulfovibrionales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8471..9151)
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Desulfovibrio sp. U5L RepID=I2Q6L1_9DELT
Uncharacterized protein {ECO:0000313|EMBL:EIG55417.1}; TaxID=596152 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio.;" source="Desulfovibrio sp. U5L.;"
SCNpilot_cont_300_bf_scaffold_436_curated_12
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10023..11414
DNA (1392bp) protein (464aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000368114C
Uncharacterized protein {ECO:0000313|EMBL:EJK87332.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_436_curated_13
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11470..11691)
DNA (222bp) protein (74aa)
Phage integrase {ECO:0000313|EMBL:KEC78393.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
SCNpilot_cont_300_bf_scaffold_436_curated_14
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11788..17937)
DNA (6150bp) protein (2050aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YB52_9BRAD
Putative uncharacterized protein {ECO:0000313|EMBL:EHR05884.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_436_curated_15
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19192..20163
DNA (972bp) protein (324aa)
Iron-dependent peroxidase n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JP43_AGRRK
iron-dependent peroxidase; K07223 putative iron-dependent peroxidase
Iron-dependent peroxidase {ECO:0000313|EMBL:ACM29323.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_cont_300_bf_scaffold_436_curated_16
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20406..21197)
DNA (792bp) protein (264aa)
hypothetical protein n=1 Tax=Mycobacterium sp. 141 RepID=UPI00037F99C7
Uncharacterized protein {ECO:0000313|EMBL:GAO38858.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_436_curated_17
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21198..21431)
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00030C143B
Uncharacterized protein {ECO:0000313|EMBL:KGJ05214.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_436_curated_18
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21434..22597)
DNA (1164bp) protein (388aa)
Conjugation TrbI family protein n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4I3_9BRAD
Conjugation TrbI family protein {ECO:0000313|EMBL:EFI52863.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
trbI2; conjugal transfer protein TrbI; K03195 type IV secretion system protein VirB10
SCNpilot_cont_300_bf_scaffold_436_curated_19
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22594..23589)
DNA (996bp) protein (332aa)
P-type conjugative transfer protein TrbG n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4I2_9BRAD
P-type conjugative transfer protein TrbG {ECO:0000313|EMBL:EFI52862.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_300_bf_scaffold_436_curated_20
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23586..24275)
DNA (690bp) protein (230aa)
Conjugal transfer protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV7_OLICO
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
Conjugal transfer protein TrbF {ECO:0000313|EMBL:AEI05266.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_436_curated_21
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24272..25633)
DNA (1362bp) protein (454aa)
Conjugal transfer protein TrbL n=2 Tax=Oligotropha carboxidovorans RepID=B6JJV8_OLICO
trbL2; conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
Conjugal transfer protein TrbL {ECO:0000313|EMBL:AEI05265.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_436_curated_22
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25638..25925)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UNB9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EKY29835.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_436_curated_23
Paracoccus halophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25951..26715)
DNA (765bp) protein (255aa)
conjugal transfer protein TrbJ n=1 Tax=Afipia birgiae RepID=UPI00037E3803
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:KGJ02983.1}; TaxID=376733 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus halophilus.;"
P-type conjugative transfer protein TrbJ
SCNpilot_cont_300_bf_scaffold_436_curated_24
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26712..29150)
DNA (2439bp) protein (813aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H7_9BRAD
CagE, TrbE, VirB component of type IV transporter system, conserved region {ECO:0000313|EMBL:EFI52857.1}; Flags: Precursor;; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_cont_300_bf_scaffold_436_curated_25
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29165..29446)
DNA (282bp) protein (94aa)
Conjugal transfer protein TrbB n=1 Tax=Afipia sp. 1NLS2 RepID=D6V4H6_9BRAD
Type IV secretory pathway, VirB3-like protein {ECO:0000313|EMBL:CEG06686.1}; TaxID=1035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis (Cat scratch disease bacillus).;"
hypothetical protein; K03198 type IV secretion system protein VirB3
SCNpilot_cont_300_bf_scaffold_436_curated_26
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29446..29778)
DNA (333bp) protein (111aa)
Conjugative transfer protein TrbC n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3ATX6_9CAUL
Conjugal transfer protein TrbC {ECO:0000313|EMBL:KHJ54590.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
conjugal transfer protein Trbc; K03197 type IV secretion system protein VirB2
SCNpilot_cont_300_bf_scaffold_436_curated_27
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29775..30755)
DNA (981bp) protein (327aa)
P-type conjugative transfer ATPase TrbB n=2 Tax=Oligotropha carboxidovorans RepID=B6JJW4_OLICO
trbB2; P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:AEI05259.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_436_curated_28
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30943..31572)
DNA (630bp) protein (210aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BAU0_PARDP
Epimerase {ECO:0000313|EMBL:KGJ08975.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
NAD-dependent epimerase/dehydratase
SCNpilot_cont_300_bf_scaffold_436_curated_29
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31591..31992)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Rhizobium meliloti RepID=UPI00036E8F29
Uncharacterized protein {ECO:0000313|EMBL:KGJ08976.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_436_curated_30
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31985..32224)
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2ZFZ9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:GAD60047.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
hypothetical protein
Displaying items 1-30 of 46 in total

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