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SCNpilot_cont_300_bf_scaffold_73_curated

Search features with annotation key words

Displaying items 1-30 of 298 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_73_curated_1
unknown

Not on your lists

comp(1..69)
DNA (69bp) protein (23aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_73_curated_2
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

314..1009
DNA (696bp) protein (232aa)
Transcriptional regulator n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2YF95_9PROT
Transcriptional regulator {ECO:0000313|EMBL:EME71621.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
transcriptional regulator
SCNpilot_cont_300_bf_scaffold_73_curated_3
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1166..1417
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WVY5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EAQ35853.1}; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
type IV pilus assembly PilZ
SCNpilot_cont_300_bf_scaffold_73_curated_4
Mesorhizobium sp. STM 4661, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1487..2257)
DNA (771bp) protein (257aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. STM 4661 RepID=M5F996_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV13827.1}; TaxID=1297570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. STM 4661.;"
hypothetical protein; K06997
SCNpilot_cont_300_bf_scaffold_73_curated_5
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2303..3019)
DNA (717bp) protein (239aa)
ABC transporter, branched-chain amino acid transport ATP-binding protein LivF n=2 Tax=Oligotropha carboxidovorans RepID=B6JJK4_OLICO
livF1; ABC transporter, branched-chain amino acid transport ATP-binding protein LivF; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter, branched-chain amino acid transport ATP-binding protein LivF {ECO:0000313|EMBL:AEI05364.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_6
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3016..3789)
DNA (774bp) protein (258aa)
ABC transporter, branched-chain amino acid transport ATP-binding protein LivG n=2 Tax=Oligotropha carboxidovorans RepID=B6JJK5_OLICO
livG1; ABC transporter, branched-chain amino acid transport ATP-binding protein LivG; K01995 branched-chain amino acid transport system ATP-binding protein
ABC transporter, branched-chain amino acid transport ATP-binding protein LivG {ECO:0000313|EMBL:AEI05363.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_7
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3786..4928)
DNA (1143bp) protein (381aa)
Branched-chain amino acid transport permease n=2 Tax=Oligotropha carboxidovorans RepID=F8BKI9_OLICM
branched-chain amino acid ABC transporter permease
Branched-chain amino acid transport permease {ECO:0000313|EMBL:AEI05362.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_8
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4931..5845)
DNA (915bp) protein (305aa)
ABC transporter permease n=2 Tax=Oligotropha carboxidovorans RepID=B6JJK7_OLICO
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:AEI05361.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5857..7017)
DNA (1161bp) protein (387aa)
ABC transporter substrate-binding protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJK8_OLICO
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
ABC transporter substrate-binding protein {ECO:0000313|EMBL:AEI05360.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_10
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7495..8286
DNA (792bp) protein (264aa)
Transcriptional regulator, IclR family n=3 Tax=Oligotropha carboxidovorans RepID=F8BKI6_OLICM
IclR family transcriptional regulator
Transcriptional regulator, IclR family {ECO:0000313|EMBL:AEI05359.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_11
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8315..9211
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family n=2 Tax=Oligotropha carboxidovorans RepID=B6JJL0_OLICO
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEI05358.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_12
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9314..9931)
DNA (618bp) protein (206aa)
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JJL1_OLICO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEI05357.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_13
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10161..11678
DNA (1518bp) protein (506aa)
mmsA; methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate semialdehyde dehydrogenase IolA {ECO:0000313|EMBL:AEI05356.1}; EC=1.2.1.18 {ECO:0000313|EMBL:AEI05356.1};; EC=1.2.1.27 {ECO:0000313|EMBL:AEI05356.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Methylmalonate semialdehyde dehydrogenase IolA n=2 Tax=Oligotropha carboxidovorans RepID=B6JJL3_OLICO
SCNpilot_cont_300_bf_scaffold_73_curated_14

Not on your lists

comp(12025..12423)
DNA (399bp) protein (133aa)
Response regulator receiver domain protein (CheY-like) n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B84_RHOPB
Marine sediment metagenome DNA, contig: S03H2_L07863 {ECO:0000313|EMBL:GAH31875.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
response regulator receiver domain-containing protein; K13589 two-component system, cell cycle response regulator CpdR
SCNpilot_cont_300_bf_scaffold_73_curated_15
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12672..13565
DNA (894bp) protein (298aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IIW1_9BRAD
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:KJC58480.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_73_curated_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14185..14979
DNA (795bp) protein (265aa)
inositol monophosphatase family protein; K01092 myo-inositol-1(or 4)-monophosphatase [EC:3.1.3.25]
Histidinol-phosphatase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IFK3_9BRAD
Inositol monophosphatase {ECO:0000313|EMBL:KIZ42986.1}; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
SCNpilot_cont_300_bf_scaffold_73_curated_17
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15098..15997)
DNA (900bp) protein (300aa)
Transcriptional regulator, LysR family n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21B87_RHOPB
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABD86349.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_cont_300_bf_scaffold_73_curated_18
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16059..16838
DNA (780bp) protein (260aa)
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IRF8_RHOP2
hypothetical protein; K07090
Uncharacterized protein {ECO:0000313|EMBL:ABD09202.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_cont_300_bf_scaffold_73_curated_19
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16841..17476)
DNA (636bp) protein (212aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Rhodopseudomonas palustris (strain BisB5) RepID=Q130B0_RHOPS
lysine exporter protein LysE/YggA
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:ABE41579.1}; TaxID=316057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB5).;"
SCNpilot_cont_300_bf_scaffold_73_curated_20
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17487..18431)
DNA (945bp) protein (315aa)
alpha/beta hydrolase; K01048 lysophospholipase [EC:3.1.1.5]
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NKS2_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS30917.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
SCNpilot_cont_300_bf_scaffold_73_curated_21
Bradyrhizobium sp. STM 3843, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18678..19163
DNA (486bp) protein (162aa)
Small heat shock protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TYD7_9BRAD
Small heat shock protein {ECO:0000313|EMBL:CCE11475.1}; TaxID=551947 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3843.;"
small heat shock protein
SCNpilot_cont_300_bf_scaffold_73_curated_22
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19372..20073)
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000367DBAB
Uncharacterized protein {ECO:0000313|EMBL:KJC58169.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_73_curated_23
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20554..25323
DNA (4770bp) protein (1590aa)
glutamate synthase (EC:1.4.7.1); K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase (NADPH/NADH) large chain n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GYA9_9BRAD
Glutamate synthase (NADPH/NADH) large chain {ECO:0000313|EMBL:ERF82482.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
SCNpilot_cont_300_bf_scaffold_73_curated_24
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25466..26923
DNA (1458bp) protein (486aa)
glutamate synthase, small subunit; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
NADH/NADPH-dependent glutamate synthase small subunit n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YKR5_9BRAD
NADH/NADPH-dependent glutamate synthase small subunit {ECO:0000313|EMBL:EHR06015.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
SCNpilot_cont_300_bf_scaffold_73_curated_25
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27148..28749)
DNA (1602bp) protein (534aa)
hypothetical protein n=1 Tax=Bradyrhizobium elkanii RepID=UPI0003798D7D
Bradyrhizobium elkanii strain UASWS1015 Contig167, whole genome shotgun sequence {ECO:0000313|EMBL:KIU51081.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein; K09795 hypothetical protein
SCNpilot_cont_300_bf_scaffold_73_curated_26
bacterium YEK0313, Bacteria

Not on your lists

comp(28911..29822)
DNA (912bp) protein (304aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086366}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
dapA; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NBD0_RHOPA
SCNpilot_cont_300_bf_scaffold_73_curated_27
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30216..31646)
DNA (1431bp) protein (477aa)
Lytic murein transglycosylase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07TS6_RHOP5
lytic murein transglycosylase
Lytic murein transglycosylase {ECO:0000313|EMBL:ABJ04658.1}; Flags: Precursor;; TaxID=316055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisA53).;"
SCNpilot_cont_300_bf_scaffold_73_curated_28
Bradyrhizobium sp. LTSP885, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31887..32756
DNA (870bp) protein (290aa)
UTP-glucose-1-phosphate uridylyltransferase; K00963 UTP--glucose-1-phosphate uridylyltransferase [EC:2.7.7.9]
UTP--glucose-1-phosphate uridylyltransferase {ECO:0000256|RuleBase:RU361259}; EC=2.7.7.9 {ECO:0000256|RuleBase:RU361259};; UDP-glucose pyrophosphorylase {ECO:0000256|RuleBase:RU361259}; TaxID=1619232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSP885.;"
UDP-glucose pyrophosphorylase n=1 Tax=Rhodopseudomonas palustris (strain BisA53) RepID=Q07TT9_RHOP5
SCNpilot_cont_300_bf_scaffold_73_curated_29
Bradyrhizobium sp. STM 3809, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32920..33180
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3809 RepID=H0TAG6_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:CCE03443.1}; TaxID=551936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. STM 3809.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_73_curated_30
Bradyrhizobium japonicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33208..33747)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium japonicum USDA 6 RepID=G7DDZ5_BRAJP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL08141.1}; TaxID=1037409 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium japonicum USDA 6.;"
Displaying items 1-30 of 298 in total

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