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SCNpilot_expt_1000_bf_scaffold_2893_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2893_curated_1
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..724
DNA (723bp) protein (241aa)
GTP-binding protein TypA n=1 Tax=Rhizobium mongolense RepID=UPI0003B5B13E
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:AJD43133.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
typA; GTP-binding protein typA/bipA (Tyrosine phosphorylated protein A)
SCNpilot_expt_1000_bf_scaffold_2893_curated_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1005..1511
DNA (507bp) protein (169aa)
GCN5-related N-acetyltransferase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAJ6_9RHIZ
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EHS50159.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
N-acetyltransferase GCN5
SCNpilot_expt_1000_bf_scaffold_2893_curated_3
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1564..2172)
DNA (609bp) protein (203aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00037E36C5
signal peptide protein
Conserved hypothetical signal peptide protein {ECO:0000313|EMBL:CAC47667.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_2893_curated_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2376..2909
DNA (534bp) protein (178aa)
Inorganic pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00209}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_00209};; Pyrophosphate phospho-hydrolase {ECO:0000256|HAMAP-Rule:MF_00209}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
ppa; inorganic pyrophosphatase; K01507 inorganic pyrophosphatase [EC:3.6.1.1]
Inorganic pyrophosphatase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PK89_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2893_curated_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2910..3224)
DNA (315bp) protein (105aa)
UPF0235 protein Arad_4365 n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JCH8_AGRRK
UPF0235 protein RRH01S_04_03020 {ECO:0000256|HAMAP-Rule:MF_00634}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein; K09131 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2893_curated_6
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3229..3522)
DNA (294bp) protein (98aa)
membrane protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036DA31B
Putative conserved protein {ECO:0000313|EMBL:CDM59577.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein; K02221 YggT family protein
SCNpilot_expt_1000_bf_scaffold_2893_curated_7
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3681..4928
DNA (1248bp) protein (416aa)
Permease n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QJM0_9RHIZ
Permease {ECO:0000313|EMBL:EKF61351.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
MFS permease rbh
SCNpilot_expt_1000_bf_scaffold_2893_curated_8
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4925..5626)
DNA (702bp) protein (234aa)
glutamine amidotransferase; K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2]
glutamine amidotransferase n=1 Tax=Rhizobium meliloti RepID=UPI0002FFBFE9
Glutamine amidotransferase class-I {ECO:0000313|EMBL:AEG05808.1}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
SCNpilot_expt_1000_bf_scaffold_2893_curated_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5676..6146)
DNA (471bp) protein (157aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B46152
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAJ92753.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_2893_curated_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6161..7765)
DNA (1605bp) protein (535aa)
HemY domain-containing protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LRI3_RHITR
HemY domain-containing protein
HemY domain-containing protein {ECO:0000313|EMBL:AGB72749.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_2893_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7779..8984)
DNA (1206bp) protein (402aa)
membrane protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI00036A5A60
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI56964.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_2893_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9141..9836)
DNA (696bp) protein (232aa)
Uroporphyrinogen-III synthase {ECO:0000313|EMBL:EMS95950.1}; EC=4.2.1.75 {ECO:0000313|EMBL:EMS95950.1};; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
hemD; uroporphyrinogen-III synthase; K01719 uroporphyrinogen-III synthase [EC:4.2.1.75]
Uroporphyrinogen-III synthase n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8B948_RHIRD
SCNpilot_expt_1000_bf_scaffold_2893_curated_13
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9859..10788)
DNA (930bp) protein (310aa)
Porphobilinogen deaminase {ECO:0000256|HAMAP-Rule:MF_00260}; Short=PBG {ECO:0000256|HAMAP-Rule:MF_00260};; EC=2.5.1.61 {ECO:0000256|HAMAP-Rule:MF_00260};; Hydroxymethylbilane synthase {ECO:0000256|HAMAP-Rule:MF_00260}; Pre-uroporphyrinogen synthase {ECO:0000256|HAMAP-Rule:MF_00260}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
hemC; porphobilinogen deaminase (EC:2.5.1.61); K01749 hydroxymethylbilane synthase [EC:2.5.1.61] rbh
Porphobilinogen deaminase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FAI6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2893_curated_14
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10862..11956
DNA (1095bp) protein (365aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteo
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PK96_9RHIZ
gcp; O-sialoglycoprotein endopeptidase
SCNpilot_expt_1000_bf_scaffold_2893_curated_15
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11987..12988
DNA (1002bp) protein (334aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
gpsA; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; K00057 glycerol-3-phosphate dehydrogenase (NAD(P)+) [EC:1.1.1.94] rbh
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8ACI2_RHIRD
SCNpilot_expt_1000_bf_scaffold_2893_curated_16
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13002..13295
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MAR0_RHIL3
YciI-like protein; K09780 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAK09977.1}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_2893_curated_17
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13302..13733
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NJG3_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF21223.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2893_curated_18
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13740..14390
DNA (651bp) protein (217aa)
methyltransferase (EC:2.1.1.-)
Ribosomal L11 methyltransferase n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F4J1_9RHIZ
Ribosomal L11 methyltransferase {ECO:0000313|EMBL:EHS52352.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_2893_curated_19
unknown

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comp(14377..14727)
DNA (351bp) protein (117aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PK98_9RHIZ
SCNpilot_expt_1000_bf_scaffold_2893_curated_20
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15035..15427
DNA (393bp) protein (131aa)
Succinate dehydrogenase cytochrome b-556 subunit {ECO:0000313|EMBL:KJX87295.1}; EC=1.3.5.4 {ECO:0000313|EMBL:KJX87295.1};; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
Succinate dehydrogenase cytochrome B-556 subunit n=2 Tax=Agrobacterium RepID=Q7CWK3_AGRT5
sdhC; succinate dehydrogenase cytochrome B-556 subunit; K00241 succinate dehydrogenase cytochrome b556 subunit
SCNpilot_expt_1000_bf_scaffold_2893_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15440..15820
DNA (381bp) protein (127aa)
Succinate dehydrogenase hydrophobic membrane anchor n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A4M2_RHIRD
Succinate dehydrogenase hydrophobic membrane anchor {ECO:0000313|EMBL:EMS95959.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;"
putative succinate dehydrogenase hydrophobic membrane anchor protein; K00242 succinate dehydrogenase membrane anchor subunit
SCNpilot_expt_1000_bf_scaffold_2893_curated_22
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15828..17669
DNA (1842bp) protein (614aa)
Succinate dehydrogenase flavoprotein subunit {ECO:0000256|RuleBase:RU362051}; EC=1.3.5.1 {ECO:0000256|RuleBase:RU362051};; TaxID=1050720 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens F2.;"
sdhA; Succinate dehydrogenase flavoprotein subunit (EC:1.3.99.1)
Succinate dehydrogenase flavoprotein subunit n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7U753_RHIRD
Displaying 22 items

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