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SCNpilot_expt_1000_bf_scaffold_1298_curated

Search features with annotation key words

Displaying items 1-30 of 99 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1298_curated_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

359..676
DNA (318bp) protein (106aa)
Ferredoxin--NAD(+) reductase n=4 Tax=Rhizobium meliloti RepID=F6BQ61_SINMB
putative ferredoxin reductase protein
Putative ferredoxin reductase protein {ECO:0000313|EMBL:AEH79935.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_1298_curated_2
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

740..1063
DNA (324bp) protein (108aa)
Dioxygenase ferredoxin {ECO:0000313|EMBL:CAC47106.1}; EC=1.-.-.- {ECO:0000313|EMBL:CAC47106.1};; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
Rieske (2Fe-2S) domain protein, MocE subfamily n=7 Tax=Rhizobium meliloti RepID=F6DZD5_SINMK
dioxygenase ferredoxin protein
SCNpilot_expt_1000_bf_scaffold_1298_curated_3
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1170..2390
DNA (1221bp) protein (407aa)
Putative ferredoxin reductase {ECO:0000313|EMBL:AGG75116.1}; EC=1.18.1.3 {ECO:0000313|EMBL:AGG75116.1};; TaxID=1286640 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain Sm2011 / Rm2011 / 2011).;"
ferredoxin reductase n=1 Tax=Rhizobium meliloti RepID=UPI0002E46839
putative ferredoxin reductase protein
SCNpilot_expt_1000_bf_scaffold_1298_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3066..3332)
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C6G4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR79818.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1298_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3348..3842
DNA (495bp) protein (165aa)
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HAF2_RHIRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EHJ97425.1}; TaxID=1107544 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens 5A.;"
SCNpilot_expt_1000_bf_scaffold_1298_curated_6
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4327..5166)
DNA (840bp) protein (280aa)
Alpha/beta hydrolase fold protein-1 protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9QZM0_9RHOB
Alpha/beta hydrolase fold protein-1 protein {ECO:0000313|EMBL:EPX85103.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_1298_curated_7
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5163..6221)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9SFS9_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EPX85109.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
type 11 methyltransferase
SCNpilot_expt_1000_bf_scaffold_1298_curated_8
unknown

Not on your lists

comp(6231..6464)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1298_curated_9
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6774..6962)
DNA (189bp) protein (63aa)
carboxyvinyl-carboxyphosphonate phosphorylmutase (EC:2.7.8.23)
Carboxyvinyl-carboxyphosphonate phosphorylmutase n=1 Tax=Bordetella holmesii F627 RepID=M5NJI8_9BORD
Putative methylisocitrate lyase 2 {ECO:0000313|EMBL:KCB36702.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
SCNpilot_expt_1000_bf_scaffold_1298_curated_10
unknown

Not on your lists

7171..7398
DNA (228bp) protein (76aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1298_curated_11
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7683..8369)
DNA (687bp) protein (229aa)
FCD domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XIV9_9BURK
FCD domain protein {ECO:0000313|EMBL:EFF73257.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1298_curated_12
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

Not on your lists

comp(8583..9128)
DNA (546bp) protein (182aa)
Tax=RBG_16_Caldithrix_48_16_curated
SCNpilot_expt_1000_bf_scaffold_1298_curated_13
unknown

Not on your lists

comp(9128..9247)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1298_curated_14
RLO_Verrucomicrobia_64_8, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(9308..9541)
DNA (234bp) protein (78aa)
Uncharacterized protein (Fragment) id=12551898 bin=BDI species=Xylella fastidiosa genus=Xylella taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Verrucomicrobia_64_8_curated
SCNpilot_expt_1000_bf_scaffold_1298_curated_15
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9901..11286
DNA (1386bp) protein (462aa)
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
acnA1; aconitate hydratase (EC:4.2.1.3); K01681 aconitate hydratase 1 [EC:4.2.1.3]
Aconitate hydratase 1 n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XIV8_9BURK
SCNpilot_expt_1000_bf_scaffold_1298_curated_16
Bordetella hinzii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11283..12644
DNA (1362bp) protein (454aa)
hydantoinase (EC:3.5.2.-); K01464 dihydropyrimidinase [EC:3.5.2.2]
Amidohydrolase n=2 Tax=Bordetella holmesii RepID=M5NK47_9BORD
Amidohydrolase family protein {ECO:0000313|EMBL:KCB41270.1}; TaxID=1331257 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 5132.;"
SCNpilot_expt_1000_bf_scaffold_1298_curated_17
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12666..13397
DNA (732bp) protein (244aa)
Isochorismatase family protein {ECO:0000313|EMBL:EFF73254.1}; EC=3.-.-.- {ECO:0000313|EMBL:EFF73254.1};; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
Isochorismatase family protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XIV6_9BURK
isochorismatase hydrolase
SCNpilot_expt_1000_bf_scaffold_1298_curated_18
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

comp(13478..13990)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI0003671934
flavin reductase
Tax=CSP1_6_Rokubacteria
SCNpilot_expt_1000_bf_scaffold_1298_curated_19
unknown

Not on your lists

comp(13992..15719)
DNA (1728bp) protein (576aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1298_curated_20
Amycolatopsis methanolica, Amycolatopsis, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15716..16918)
DNA (1203bp) protein (401aa)
desulfurization protein n=1 Tax=Amycolatopsis sp. ATCC 39116 RepID=UPI0002628A47
Putative desulfurization protein {ECO:0000313|EMBL:AIJ25382.1}; TaxID=1068978 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis.;" source="Amycolatopsis methanolica 239.;"
putative desulfurization protein
SCNpilot_expt_1000_bf_scaffold_1298_curated_21
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16943..18832)
DNA (1890bp) protein (630aa)
hypothetical protein n=1 Tax=Streptomyces scabrisporus RepID=UPI00036CD398
Peptide ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EGK72743.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
oligopeptide/dipeptide ABC transporter ATPase
SCNpilot_expt_1000_bf_scaffold_1298_curated_22
Nocardiopsis alba, Nocardiopsis, Streptosporangiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18832..19668)
DNA (837bp) protein (279aa)
N-terminal TM domain of oligopeptide transport permease C family protein n=1 Tax=Nocardiopsis alba (strain ATCC BAA-2165 / BE74) RepID=J7L906_NOCAA
N-terminal TM domain of oligopeptide transport permease C family protein
N-terminal TM domain of oligopeptide transport permease C family protein {ECO:0000313|EMBL:AFR07925.1}; TaxID=1205910 species="Bacteria; Actinobacteria; Streptosporangiales; Nocardiopsaceae; Nocardiopsis.;" source="Nocardiopsis alba (strain ATCC BAA-2165 / BE74).;"
SCNpilot_expt_1000_bf_scaffold_1298_curated_23
Saccharomonospora viridis, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19665..20510)
DNA (846bp) protein (282aa)
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101) RepID=C7MSQ9_SACVD
ABC-type dipeptide/oligopeptide/nickel transport system, permease component; K02033 peptide/nickel transport system permease protein
ABC-type dipeptide/oligopeptide/nickel transport system, permease component {ECO:0000313|EMBL:ACU96657.1}; TaxID=471857 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora viridis (strain ATCC 15386 / DSM 43017 / JCM 3036 /; NBRC 12207 / P101).;"
SCNpilot_expt_1000_bf_scaffold_1298_curated_24
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20669..22216)
DNA (1548bp) protein (516aa)
Probable peptide ABC transporter,substrate-binding protein n=2 Tax=Saccharopolyspora erythraea RepID=A4F8F0_SACEN
peptide ABC transporter,substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein
Probable peptide ABC transporter,substrate-binding protein {ECO:0000313|EMBL:CAM00325.1}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora erythraea (strain NRRL 23338).;"
SCNpilot_expt_1000_bf_scaffold_1298_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22538..23263
DNA (726bp) protein (242aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; Flags: Precursor;; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
dapB2; dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26]
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0W271_RHILT
SCNpilot_expt_1000_bf_scaffold_1298_curated_26
unknown

Not on your lists

comp(25012..25335)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1298_curated_27
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25784..26545)
DNA (762bp) protein (254aa)
ABC transporter-like protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
histidinol-phosphatase n=1 Tax=Rhizobium leguminosarum RepID=UPI000368D05A
Ferric enterobactin ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIC30832.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCNpilot_expt_1000_bf_scaffold_1298_curated_28
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26604..27554)
DNA (951bp) protein (317aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J2KYF5_9RHIZ
ABC-type Fe3+-siderophore transport system, permease component {ECO:0000313|EMBL:EJJ26262.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
transport system permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1298_curated_29
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27551..28570)
DNA (1020bp) protein (340aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium leguminosarum RepID=UPI00037AEE93
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:EJN06755.1}; Flags: Precursor;; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1298_curated_30
unknown

Not on your lists

comp(28651..28896)
DNA (246bp) protein (82aa)

This feature has no annotations

Displaying items 1-30 of 99 in total

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