ggKbase home page

SCNpilot_expt_1000_bf_scaffold_1583_curated

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1583_curated_1
Sphingobium lucknowense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..265
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262BA84
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KER34598.1}; TaxID=1450518 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium lucknowense F2.;"
SCNpilot_expt_1000_bf_scaffold_1583_curated_2
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(360..1601)
DNA (1242bp) protein (414aa)
HipA N-terminal domain-containing protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
HipA N-terminal domain-containing protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NSF8_9RHIZ
HipA N-terminal domain-containing protein {ECO:0000313|EMBL:EKF42265.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_1583_curated_3
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1579..1899)
DNA (321bp) protein (107aa)
XRE family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NWR2_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:KFE34699.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1583_curated_4
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2219..2485
DNA (267bp) protein (89aa)
XRE family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2N4F7_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EKF42263.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
XRE family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1583_curated_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3218..3715
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NSF2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42260.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_curated_6
Thioclava sp. 13D2W-2, Thioclava, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3852..4133
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Alphaproteobacteria RepID=C8WDU5_ZYMMN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFE34694.1}; TaxID=1317124 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Thioclava.;" source="Thioclava sp. 13D2W-2.;"
SCNpilot_expt_1000_bf_scaffold_1583_curated_7
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4249..5298
DNA (1050bp) protein (350aa)
Replication protein A n=1 Tax=Nitratireductor indicus C115 RepID=K2N4F2_9RHIZ
Replication protein A {ECO:0000313|EMBL:EKF42258.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
replication protein A
SCNpilot_expt_1000_bf_scaffold_1583_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5295..5948
DNA (654bp) protein (218aa)
Cobyrinic acid ac-diamide synthase n=1 Tax=Nitratireductor indicus C115 RepID=K2PME4_9RHIZ
Cobyrinic acid ac-diamide synthase {ECO:0000313|EMBL:EKF42257.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
SCNpilot_expt_1000_bf_scaffold_1583_curated_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5945..6199
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P4G2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42256.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6196..6714
DNA (519bp) protein (173aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NSE9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42255.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_curated_11
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6882..7226
DNA (345bp) protein (115aa)
TraF peptidase n=1 Tax=Nitratireductor indicus C115 RepID=K2NWQ5_9RHIZ
TraF peptidase {ECO:0000313|EMBL:EKF42254.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
TraF peptidase. serine peptidase MEROPS family S26C
SCNpilot_expt_1000_bf_scaffold_1583_curated_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7262..7597
DNA (336bp) protein (112aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N4E8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42253.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_curated_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7602..8312
DNA (711bp) protein (237aa)
Lytic transglycosylase n=1 Tax=Nitratireductor indicus C115 RepID=K2PME0_9RHIZ
Lytic transglycosylase {ECO:0000313|EMBL:EKF42252.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
lytic transglycosylase
SCNpilot_expt_1000_bf_scaffold_1583_curated_14
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8626..10698
DNA (2073bp) protein (691aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2P4F7_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42251.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10874..12862
DNA (1989bp) protein (663aa)
Conjugal transfer coupling protein TraG n=1 Tax=Nitratireductor indicus C115 RepID=K2NSE3_9RHIZ
Conjugal transfer coupling protein TraG {ECO:0000313|EMBL:EKF42250.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_expt_1000_bf_scaffold_1583_curated_16
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12877..13338
DNA (462bp) protein (154aa)
CopG family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NWQ2_9RHIZ
CopG family transcriptional regulator {ECO:0000313|EMBL:EKF42249.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
CopG family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1583_curated_17
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13470..14477
DNA (1008bp) protein (336aa)
P-type conjugative transfer ATPase TrbB n=1 Tax=Nitratireductor indicus C115 RepID=K2N4E4_9RHIZ
P-type conjugative transfer ATPase TrbB {ECO:0000313|EMBL:EKF42248.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
P-type conjugative transfer ATPase TrbB; K03196 type IV secretion system protein VirB11
SCNpilot_expt_1000_bf_scaffold_1583_curated_18
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14474..14806
DNA (333bp) protein (111aa)
Conjugal transfer protein TrbC n=4 Tax=Alphaproteobacteria RepID=C8WDW1_ZYMMN
conjugal transfer protein Trbc; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:EQB00579.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
SCNpilot_expt_1000_bf_scaffold_1583_curated_19
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14806..15087
DNA (282bp) protein (94aa)
Conjugal transfer protein TrbB n=1 Tax=Nitratireductor indicus C115 RepID=K2P4F3_9RHIZ
Conjugal transfer protein TrbB {ECO:0000313|EMBL:EKF42246.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
conjugal transfer protein TrbB; K03198 type IV secretion system protein VirB3
SCNpilot_expt_1000_bf_scaffold_1583_curated_20
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15098..17605
DNA (2508bp) protein (836aa)
Conjugal transfer ATPase TrbE n=1 Tax=Nitratireductor indicus C115 RepID=K2NSD8_9RHIZ
Conjugal transfer ATPase TrbE {ECO:0000313|EMBL:EKF42245.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
SCNpilot_expt_1000_bf_scaffold_1583_curated_21
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17602..18474
DNA (873bp) protein (291aa)
P-type conjugative transfer protein TrbJ n=2 Tax=Alphaproteobacteria RepID=C8WDW4_ZYMMN
conjugal transfer protein TrbJ
Conjugal transfer protein TrbJ {ECO:0000313|EMBL:EKF42244.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
SCNpilot_expt_1000_bf_scaffold_1583_curated_22
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18417..18692
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N4D9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF42243.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1583_curated_23
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18696..20057
DNA (1362bp) protein (454aa)
Conjugal transfer protein TrbL n=1 Tax=Nitratireductor indicus C115 RepID=K2PMD2_9RHIZ
Conjugal transfer protein TrbL {ECO:0000313|EMBL:EKF42242.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
conjugal transfer protein TrbL; K07344 type IV secretion system protein TrbL
SCNpilot_expt_1000_bf_scaffold_1583_curated_24
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20054..20743
DNA (690bp) protein (230aa)
Conjugal transfer protein n=1 Tax=Zymomonas mobilis subsp. mobilis (strain NCIB 11163) RepID=C8WDW7_ZYMMN
conjugal transfer protein TrbF; K03200 type IV secretion system protein VirB5
Conjugal transfer protein TrbF {ECO:0000313|EMBL:EPR17229.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
SCNpilot_expt_1000_bf_scaffold_1583_curated_25
Haematobacter missouriensis, Haematobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20740..20946
DNA (207bp) protein (69aa)
P-type conjugative transfer protein TrbG n=1 Tax=Zymomonas mobilis subsp. mobilis (strain NCIB 11163) RepID=C8WDW8_ZYMMN
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KFI26668.1}; TaxID=366616 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Haematobacter.;" source="Haematobacter missouriensis.;"
Displaying 25 items

View Taxonomy