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SCNpilot_expt_1000_bf_scaffold_6626_curated

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6626_curated_1
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(152..1792)
DNA (1641bp) protein (547aa)
ATPase AAA n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HGY3_9RHIZ
ATPase AAA {ECO:0000313|EMBL:EPE98122.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
ATPase, AAA family
SCNpilot_expt_1000_bf_scaffold_6626_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1809..2444)
DNA (636bp) protein (212aa)
Amino acid efflux protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JE33_AGRRK
amino acid efflux protein
Amino acid efflux protein {ECO:0000313|EMBL:ACM28379.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_6626_curated_3
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2626..3447
DNA (822bp) protein (274aa)
Protein involved in cellulose biosynthesis (CelD) n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3I0Y2_9BRAD
Protein involved in cellulose biosynthesis (CelD) {ECO:0000313|EMBL:EJN11593.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
protein involved in cellulose biosynthesis (CelD)
SCNpilot_expt_1000_bf_scaffold_6626_curated_4
unknown

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3453..3836
DNA (384bp) protein (128aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6626_curated_5
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3833..4648)
DNA (816bp) protein (272aa)
murI; glutamate racemase (EC:5.1.1.3); K01776 glutamate racemase [EC:5.1.1.3]
Glutamate racemase {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00031911}; EC=5.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00258, ECO:0000256|SAAS:SAAS00041166};; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
glutamate racemase n=1 Tax=Rhizobium leguminosarum RepID=UPI00037D0B28
SCNpilot_expt_1000_bf_scaffold_6626_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4617..5447)
DNA (831bp) protein (277aa)
tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ {ECO:0000256|RuleBase:RU362024}; EC=2.1.1.200 {ECO:0000256|RuleBase:RU362024};; tRNA (cytidine(32)/uridine(32)-2'-O)-methyltransferase {ECO:0000256|RuleBase:RU362024}; tRNA Cm32/Um32 methyltransferase {ECO:0000256|RuleBase:RU362024}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
RNA methyltransferase n=1 Tax=Rhizobium leguminosarum RepID=UPI000375E338
RNA methyltransferase, TrmH family, group 1
SCNpilot_expt_1000_bf_scaffold_6626_curated_7
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5519..6394)
DNA (876bp) protein (292aa)
Putative membrane protein (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2RWQ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUB95945.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_6626_curated_8
unknown

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6725..7681
DNA (957bp) protein (319aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6626_curated_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7537..8076)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2WH00_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAJ91190.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6626_curated_10
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8300..9514
DNA (1215bp) protein (405aa)
Isocitrate dehydrogenase [NADP] {ECO:0000256|PIRNR:PIRNR000108}; EC=1.1.1.42 {ECO:0000256|PIRNR:PIRNR000108};; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LKX7_RHITR
isocitrate dehydrogenase, NADP-dependent
SCNpilot_expt_1000_bf_scaffold_6626_curated_11
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9511..9900)
DNA (390bp) protein (130aa)
plasmid stabilization protein n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000362D3F7
Uncharacterized protein {ECO:0000313|EMBL:EJL53644.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6626_curated_12
unknown

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comp(9912..10166)
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6626_curated_13
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10303..11433)
DNA (1131bp) protein (377aa)
tgt; queuine tRNA-ribosyltransferase; K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29]
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Queuine tRNA-ribosyltransferase n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZPR9_RHILW
SCNpilot_expt_1000_bf_scaffold_6626_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11430..12515)
DNA (1086bp) protein (362aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
queA; S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-); K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-]
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0GYJ3_RHILT
SCNpilot_expt_1000_bf_scaffold_6626_curated_15
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12520..12969)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NF51_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF19519.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein; K09936 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6626_curated_16
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13069..13584)
DNA (516bp) protein (172aa)
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
ppiB; peptidyl-prolyl cis-trans isomerase B (EC:5.2.1.8); K03768 peptidyl-prolyl cis-trans isomerase B (cyclophilin B) [EC:5.2.1.8]
peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizobium mongolense RepID=UPI0003B59177
SCNpilot_expt_1000_bf_scaffold_6626_curated_17
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13621..14193)
DNA (573bp) protein (191aa)
ppiA; peptidyl prolyl cis-trans isomerase A signal peptide protein (EC:5.2.1.8); K03767 peptidyl-prolyl cis-trans isomerase A (cyclophilin A) [EC:5.2.1.8]
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU000493}; EC=5.2.1.8 {ECO:0000256|RuleBase:RU000493};; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhizobium etli (strain CFN 42 / ATCC 51251) RepID=Q2K8D8_RHIEC
SCNpilot_expt_1000_bf_scaffold_6626_curated_18
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14347..14718)
DNA (372bp) protein (124aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
coaD; phosphopantetheine adenylyltransferase (EC:2.7.7.3)
Phosphopantetheine adenylyltransferase n=8 Tax=Rhizobium meliloti RepID=COAD_RHIME
SCNpilot_expt_1000_bf_scaffold_6626_curated_19
unknown

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14848..15072
DNA (225bp) protein (75aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6626_curated_20
unknown

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15239..15403
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6626_curated_21
unknown

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15453..15587
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6626_curated_22
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(15744..17483)
DNA (1740bp) protein (580aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3]
DNA gyrase subunit A {ECO:0000256|HAMAP-Rule:MF_01897}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01897};; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
DNA gyrase subunit A n=3 Tax=Rhizobium RepID=Q2K8E2_RHIEC
Displaying 22 items

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