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SCNpilot_expt_1000_bf_scaffold_5260_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5260_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..133)
DNA (132bp) protein (44aa)
Glutamine transport system permease protein GlnP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZL5_9RHIZ
Glutamine transport system permease protein GlnP {ECO:0000313|EMBL:EYR77529.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glnP; glutamine ABC transporter permease; K10037 glutamine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5260_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(247..465)
DNA (219bp) protein (73aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Hoeflea sp. 108 RepID=UPI0003763125
Glutamine-binding periplasmic protein GlnH {ECO:0000313|EMBL:EYR77528.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glnH; glutamine ABC transporter substrate-binding protein; K10036 glutamine transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5260_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(989..2326)
DNA (1338bp) protein (446aa)
Acetylornithine transaminase {ECO:0000313|EMBL:EYR77527.1}; EC=2.6.1.11 {ECO:0000313|EMBL:EYR77527.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K00837 [EC:2.6.1.-] rbh
Acetylornithine transaminase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAN2_9RHIZ
SCNpilot_expt_1000_bf_scaffold_5260_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2323..2706)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000364F6C9
Transcriptional regulator, RpiR family {ECO:0000313|EMBL:EYR77526.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
RpiR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5260_curated_5
unknown

Not on your lists

2844..3191
DNA (348bp) protein (116aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5260_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3410..4120
DNA (711bp) protein (237aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00036E32FF
Uncharacterized protein {ECO:0000313|EMBL:EYR77525.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5260_curated_7
Methylobacterium sp. ME121, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4246..4572)
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) RepID=B1M3R8_METRJ
Uncharacterized protein {ECO:0000313|EMBL:GAN50421.1}; TaxID=1604132 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. ME121.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5260_curated_8
Modestobacter multiseptatus, Modestobacter, Geodermatophilales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4648..5286)
DNA (639bp) protein (213aa)
hypothetical protein n=1 Tax=Sphingomonas sp. Mn802worker RepID=UPI00037F0ED1
short-chain dehydrogenase/reductase (SDR)
Short-chain dehydrogenase/reductase (SDR) {ECO:0000313|EMBL:CCH88477.1}; TaxID=1144889 species="Bacteria; Actinobacteria; Geodermatophilales; Geodermatophilaceae; Modestobacter.;" source="Modestobacter marinus (strain BC501).;"
SCNpilot_expt_1000_bf_scaffold_5260_curated_9
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6134..7522)
DNA (1389bp) protein (463aa)
D-2-hydroxyglutarate dehydrogenase n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S770_9RHOB
Oxidoreductase {ECO:0000313|EMBL:KHQ51273.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
glcD5; glycolate oxidase subunit GlcD
SCNpilot_expt_1000_bf_scaffold_5260_curated_10
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7620..8546
DNA (927bp) protein (309aa)
Transcriptional regulator, LysR family n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9SI74_9RHOB
Transcriptional regulator, LysR family protein {ECO:0000313|EMBL:KHQ51274.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5260_curated_11
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8550..9293)
DNA (744bp) protein (248aa)
cupin; K14977 ureidoglycine aminohydrolase [EC:3.5.3.-]
Uncharacterized protein n=1 Tax=Sagittula stellata E-37 RepID=A3K338_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EBA08597.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
SCNpilot_expt_1000_bf_scaffold_5260_curated_12
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9299..10450)
DNA (1152bp) protein (384aa)
Putative carboxypeptidase n=1 Tax=Sagittula stellata E-37 RepID=A3K339_9RHOB
Putative carboxypeptidase {ECO:0000313|EMBL:KHQ51276.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
glutamate carboxypeptidase
SCNpilot_expt_1000_bf_scaffold_5260_curated_13
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11389..12288)
DNA (900bp) protein (300aa)
Putative xylanase/chitin deacetylase n=1 Tax=Sagittula stellata E-37 RepID=A3K341_9RHOB
Putative xylanase/chitin deacetylase {ECO:0000313|EMBL:KHQ51278.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_5260_curated_14
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12306..13034)
DNA (729bp) protein (243aa)
hydantoin racemase; K01797 [EC:5.1.99.-]
Putative hydantoin racemase n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9SI70_9RHOB
Putative hydantoin racemase {ECO:0000313|EMBL:KHQ51279.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
SCNpilot_expt_1000_bf_scaffold_5260_curated_15
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13069..13875)
DNA (807bp) protein (269aa)
Spermidine Putrescine ABC transporter permease component potC n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9R253_9RHOB
Spermidine Putrescine ABC transporter permease component potC {ECO:0000313|EMBL:KHQ51280.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
spermidine/putrescine transport system, permease protein
SCNpilot_expt_1000_bf_scaffold_5260_curated_16
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13872..14729)
DNA (858bp) protein (286aa)
Hypothetical polyamine ABC transporter, permease protein n=1 Tax=Sagittula stellata E-37 RepID=A3K344_9RHOB
Putative polyamine ABC transporter, permease protein {ECO:0000313|EMBL:KHQ51281.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
Binding-protein-dependent transport systems inner membrane component; K02054 putative spermidine/putrescine transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5260_curated_17
Ponticoccus sp. UMTAT08, Ponticoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14726..15796)
DNA (1071bp) protein (357aa)
ABC transporter-like protein; K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
Uridine kinase:ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase n=1 Tax=Sagittula stellata E-37 RepID=A3K345_9RHOB
Uridine kinase:ATP/GTP-binding site motif A (P-loop):ABC transporter:AAA ATPase {ECO:0000313|EMBL:KHQ51282.1}; TaxID=1515334 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ponticoccus.;" source="Ponticoccus sp. UMTAT08.;"
SCNpilot_expt_1000_bf_scaffold_5260_curated_18
Salipiger mucosus, Salipiger, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15801..16568)
DNA (768bp) protein (256aa)
ABC transporter, periplasmic spermidine putrescine-binding protein PotD n=1 Tax=Salipiger mucosus DSM 16094 RepID=S9S758_9RHOB
ABC transporter, periplasmic spermidine putrescine-binding protein PotD {ECO:0000313|EMBL:EPX86025.1}; TaxID=1123237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Salipiger.;" source="Salipiger mucosus DSM 16094.;"
potD2; putative ABC transporter, spermidine/putrescine-binding protein PotD
SCNpilot_expt_1000_bf_scaffold_5260_curated_19
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16951..18654)
DNA (1704bp) protein (568aa)
Acetolactate synthase II large subunit {ECO:0000313|EMBL:EBA08606.1}; EC=2.2.1.6 {ECO:0000313|EMBL:EBA08606.1};; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
Acetolactate synthase II large subunit n=1 Tax=Sagittula stellata E-37 RepID=A3K347_9RHOB
putative acetolactate synthase
SCNpilot_expt_1000_bf_scaffold_5260_curated_20
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18908..19420)
DNA (513bp) protein (171aa)
UPI0003CF5B2D related cluster n=1 Tax=unknown RepID=UPI0003CF5B2D
nocMc; nopaline ABC transporter permease; K10019 octopine/nopaline transport system permease protein
Nopaline ABC transporter, permease protein {ECO:0000313|EMBL:ACE94943.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_5260_curated_21
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19432..19689)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037671FD
nocQ; nopaline ABC transporter; K10020 octopine/nopaline transport system permease protein
Nopaline ABC transporter {ECO:0000313|EMBL:ACM28420.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_5260_curated_22
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19699..19962)
DNA (264bp) protein (88aa)
hypothetical protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037671FD
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:EHS52799.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
nocQ; nopaline ABC transporter; K10020 octopine/nopaline transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5260_curated_23
unknown

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comp(19913..20089)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5260_curated_24
unknown

Not on your lists

21306..21665
DNA (360bp) protein (120aa)

This feature has no annotations

Displaying 24 items

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