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SCNpilot_expt_1000_bf_scaffold_879_curated

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_879_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..2628
DNA (2628bp) protein (876aa)
Methionine synthase MetH {ECO:0000313|EMBL:EYR78448.1}; EC=2.1.1.13 {ECO:0000313|EMBL:EYR78448.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
metH; B12-dependent methionine synthase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13]
methionine synthase n=1 Tax=Rhizobium giardinii RepID=UPI0003702489
SCNpilot_expt_1000_bf_scaffold_879_curated_2
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3353..3475)
DNA (123bp) protein (41aa)
hcr1; NADH oxidoreductase Hcr (EC:1.-.-.-)
Ferredoxin n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0G3_9RHIZ
Ferredoxin {ECO:0000313|EMBL:EHS53821.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_879_curated_3
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3475..4425)
DNA (951bp) protein (317aa)
Ferredoxin n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F0G3_9RHIZ
Ferredoxin {ECO:0000313|EMBL:EHS53821.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
ferredoxin I
SCNpilot_expt_1000_bf_scaffold_879_curated_4
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4427..5671)
DNA (1245bp) protein (415aa)
Ring hydroxylating dioxygenase alpha-subunit n=1 Tax=Rhizobium sp. RepID=L0NKQ8_RHISP
Ring hydroxylating dioxygenase alpha-subunit {ECO:0000313|EMBL:CCF21648.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
ring hydroxylating dioxygenase alpha-subunit; K00479 Rieske 2Fe-2S family protein
SCNpilot_expt_1000_bf_scaffold_879_curated_5
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6070..6993)
DNA (924bp) protein (308aa)
cation diffusion facilitator family transporter n=1 Tax=Rhizobium radiobacter RepID=UPI00036F3D59
Cation efflux system component {ECO:0000313|EMBL:EGL65769.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
cation efflux system component rbh
SCNpilot_expt_1000_bf_scaffold_879_curated_6
Beijerinckia indica, Beijerinckia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7073..7627)
DNA (555bp) protein (185aa)
Isochorismatase hydrolase n=1 Tax=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) RepID=B2IJL7_BEII9
isochorismatase hydrolase
Isochorismatase hydrolase {ECO:0000313|EMBL:ACB94889.1}; TaxID=395963 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Beijerinckia.;" source="Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB; 8712).;"
SCNpilot_expt_1000_bf_scaffold_879_curated_7
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7837..8346)
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Mesorhizobium opportunistum (strain LMG 24607 / HAMBI 3007 / WSM2075) RepID=F7Y5F8_MESOW
Uncharacterized protein {ECO:0000313|EMBL:CDX32992.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein; K09796 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_879_curated_8
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8405..8788)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00035C9314
Uncharacterized protein {ECO:0000313|EMBL:EUB97636.1}; Flags: Precursor;; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
SCNpilot_expt_1000_bf_scaffold_879_curated_9
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8940..9719)
DNA (780bp) protein (260aa)
Menaquinone biosynthesis methyltransferase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9JJA4_AGRRK
menaquinone biosynthesis methyltransferase
SAM-dependent methyltransferase {ECO:0000313|EMBL:KEA09271.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_879_curated_10
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9716..10072)
DNA (357bp) protein (119aa)
Putative pseudoazurin n=1 Tax=Rhizobium lupini HPC(L) RepID=K5CQR9_RHILU
Pseudoazurin {ECO:0000313|EMBL:KGE82526.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
pazS; Pseudoazurin
SCNpilot_expt_1000_bf_scaffold_879_curated_11
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10014..10937)
DNA (924bp) protein (308aa)
Iron ABC transporter ATPase n=1 Tax=Rhizobium lupini HPC(L) RepID=K5D225_RHILU
Histidinol phosphatase {ECO:0000313|EMBL:KGE82525.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
iron-dicitrate ABC transporter, ATP-binding component
SCNpilot_expt_1000_bf_scaffold_879_curated_12
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10934..11962)
DNA (1029bp) protein (343aa)
ABC-type Fe3+-siderophore transport system, permease component n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XWN3_RHIRD
Vitamin B12 import system permease protein btuC {ECO:0000313|EMBL:KJX86860.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
iron ABC transporter membrane spanning protein; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_879_curated_13
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11959..12993)
DNA (1035bp) protein (345aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036214BA
Fe III ABC transporter, periplasmic-binding protein; K02016 iron complex transport system substrate-binding protein
Putative iron ABC transporter periplasmic substrate-binding protein {ECO:0000313|EMBL:CCF01181.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_879_curated_14
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13602..14789
DNA (1188bp) protein (396aa)
Cytosine deaminase-like metal-dependent hydrolase n=1 Tax=Rhizobium sp. CF142 RepID=J1TGR9_9RHIZ
Cytosine deaminase-like metal-dependent hydrolase {ECO:0000313|EMBL:EJJ31111.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
codAb; cytosine deaminase
SCNpilot_expt_1000_bf_scaffold_879_curated_15
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14786..16741)
DNA (1956bp) protein (652aa)
Iron-hydroxamate transporter permease subunit n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QA67_9RHIZ
Iron-hydroxamate transporter permease subunit {ECO:0000313|EMBL:EKF57921.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
iron-hydroxamate transporter permease subunit; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_879_curated_16
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16738..17616)
DNA (879bp) protein (293aa)
Periplasmic binding protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QSA6_9RHIZ
Periplasmic binding protein {ECO:0000313|EMBL:EKF57922.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
periplasmic binding protein
SCNpilot_expt_1000_bf_scaffold_879_curated_17
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17620..19998)
DNA (2379bp) protein (793aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00036C110E
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EKF57923.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
SCNpilot_expt_1000_bf_scaffold_879_curated_18
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20153..21136)
DNA (984bp) protein (328aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00038002DD
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:KJF67498.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
fecR; FecR protein; K07165 transmembrane sensor
SCNpilot_expt_1000_bf_scaffold_879_curated_19
Rhizobium nepotum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21153..21650)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=Pannonibacter phragmitetus RepID=UPI00035C36A4
RNA polymerase sigma 70 {ECO:0000313|EMBL:KJF67497.1}; TaxID=1368418 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium nepotum 39/7.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
SCNpilot_expt_1000_bf_scaffold_879_curated_20
Pseudomonas sp. GM18, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22026..22247
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM18 RepID=J3EJP1_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM13850.1}; TaxID=1144324 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM18.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_879_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22285..23991)
DNA (1707bp) protein (569aa)
dihydroxyacetone kinase; K00863 dihydroxyacetone kinase [EC:2.7.1.29]
Dihydroxyacetone kinase n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1X3X9_9RHIZ
Dihydroxyacetone kinase {ECO:0000313|EMBL:KDP72473.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_879_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23996..24928)
DNA (933bp) protein (311aa)
Xylose isomerase domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CXD7_9RHIZ
Xylose isomerase domain-containing protein {ECO:0000313|EMBL:EYR82583.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
xylose isomerase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_879_curated_23
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24959..26473)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H919_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE95084.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
52.8 kDa protein in TAR-I ttuC' 3'region
SCNpilot_expt_1000_bf_scaffold_879_curated_24
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26506..27006)
DNA (501bp) protein (167aa)
Uncharacterized protein n=2 Tax=Ochrobactrum intermedium RepID=M5JX55_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EEQ92846.1}; TaxID=641118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium LMG 3301.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_879_curated_25
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27077..28066)
DNA (990bp) protein (330aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H866_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE95082.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_879_curated_26
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28138..29160)
DNA (1023bp) protein (341aa)
4-hydroxythreonine-4-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154}; EC=1.1.1.262 {ECO:0000256|HAMAP-Rule:MF_00536, ECO:0000256|SAAS:SAAS00086154};; 4-(phosphohydroxy)-L-threonine dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00536}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
pdxA2; probabable pyridoxal phosphate biosynthetic protein PdxA; K00097 4-hydroxythreonine-4-phosphate dehydrogenase [EC:1.1.1.262]
4-hydroxythreonine-4-phosphate dehydrogenase n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HNU3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_879_curated_27
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29334..30023
DNA (690bp) protein (230aa)
GntR family transcriptional regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HA73_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EPE95080.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_879_curated_28
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30111..30515
DNA (405bp) protein (135aa)
signal peptide protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00037CA6C3
conserved hypothetical signal peptide protein
Uncharacterized protein {ECO:0000313|EMBL:GAJ90646.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
SCNpilot_expt_1000_bf_scaffold_879_curated_29
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30522..31181)
DNA (660bp) protein (220aa)
peroxiredoxin (EC:1.11.1.15)
Putative peroxiredoxin {ECO:0000313|EMBL:AFL49984.1}; EC=1.11.1.15 {ECO:0000313|EMBL:AFL49984.1};; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
peroxidase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000362B16C
SCNpilot_expt_1000_bf_scaffold_879_curated_30
Agrobacterium sp. ATCC 31749, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31321..32283)
DNA (963bp) protein (321aa)
ROK family protein; K00845 glucokinase [EC:2.7.1.2]
Putative glucokinase n=1 Tax=Agrobacterium sp. ATCC 31749 RepID=F5J8V6_9RHIZ
Putative glucokinase {ECO:0000313|EMBL:EGL65665.1}; TaxID=82789 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. ATCC 31749.;"
Displaying items 1-30 of 56 in total

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