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SCNpilot_expt_1000_bf_scaffold_1637_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1637_curated_1
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1518)
DNA (1518bp) protein (506aa)
cobT; cobyrinic acid synthase; K09883 cobaltochelatase CobT [EC:6.6.1.2] rbh
Cobalt chelatase, pCobT subunit n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F5A1_9RHIZ
Cobalt chelatase {ECO:0000313|EMBL:KGD87682.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_1637_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1619..2602)
DNA (984bp) protein (328aa)
cobalt chelatase small subunit; K09882 cobaltochelatase CobS [EC:6.6.1.2]
Cobalamin biosynthesis protein n=1 Tax=Ensifer adhaerens RepID=I0FX75_ENSAD
Cobalamin biosynthesis protein {ECO:0000313|EMBL:BAL73112.1}; Cobalamin biosynthesis protein CobS {ECO:0000313|EMBL:KDP70373.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
SCNpilot_expt_1000_bf_scaffold_1637_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2711..3358)
DNA (648bp) protein (216aa)
DnaJ family molecular chaperone n=1 Tax=Agrobacterium tumefaciens F2 RepID=F7UCL0_RHIRD
Molecular chaperone DnaJ {ECO:0000313|EMBL:KDP70372.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
dnaJ; molecular chaperone DnaJ family
SCNpilot_expt_1000_bf_scaffold_1637_curated_4
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3495..3776
DNA (282bp) protein (94aa)
Stress-induced morphogen n=1 Tax=Rhizobium sp. CF122 RepID=J3BT24_9RHIZ
Stress-induced morphogen {ECO:0000313|EMBL:EJL57586.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
BolA family protein; K05527 BolA protein
SCNpilot_expt_1000_bf_scaffold_1637_curated_5
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3887..5611)
DNA (1725bp) protein (575aa)
Putative periplasmic binding ABC transporter protein, probable sugar binding putative signal peptide n=1 Tax=Rhizobium sp. RepID=L0NIL8_RHISP
ABC transporter substrate-binding protein {ECO:0000313|EMBL:KEQ04130.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1637_curated_6
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5696..5977)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A1N9_RHIFH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCE97619.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1637_curated_7
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5993..6811)
DNA (819bp) protein (273aa)
ABC-type sugar transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J2LEX8_9RHIZ
Strain MEJ076 contig_6, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ03788.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
putative permease component of ABC transporter; K02026 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1637_curated_8
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6822..7688)
DNA (867bp) protein (289aa)
Putative permease component of ABC transporter n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HJY7_9RHIZ
Putative permease component of ABC transporter {ECO:0000313|EMBL:EPE98355.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
putative permease component of ABC transporter; K02025 multiple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1637_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7692..8762)
DNA (1071bp) protein (357aa)
ATPase component of ABC-type sugar transporter n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0WET6_RHILT
ATPase component of ABC-type sugar transporter {ECO:0000313|EMBL:EJC84411.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
ABC transporter; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1637_curated_10
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8775..9857)
DNA (1083bp) protein (361aa)
ATPase component of ABC-type sugar transporter n=1 Tax=Rhizobium sp. CF122 RepID=J3BV26_9RHIZ
ATPase component of ABC-type sugar transporter {ECO:0000313|EMBL:EJL58259.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
putative ATP-binding component of ABC transporter; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1637_curated_11
Agrobacterium sp. H13-3, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9910..11427)
DNA (1518bp) protein (506aa)
Glycerol-3-phosphate dehydrogenase (EC:1.1.5.3); K00111 glycerol-3-phosphate dehydrogenase [EC:1.1.5.3]
Glycerol-3-phosphate dehydrogenase {ECO:0000256|RuleBase:RU361217}; EC=1.1.5.3 {ECO:0000256|RuleBase:RU361217};; TaxID=861208 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium sp. (strain H13-3) (Rhizobium lupini (strain H13-3)).;"
glycerol-3-phosphate dehydrogenase n=1 Tax=Agrobacterium sp. 10MFCol1.1 RepID=UPI0003773EA7
SCNpilot_expt_1000_bf_scaffold_1637_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11539..12318)
DNA (780bp) protein (260aa)
DeoR faimly transcriptional regulator n=1 Tax=Rhizobium giardinii RepID=UPI00036129C5
Glycerol-3-phosphate regulon repressor {ECO:0000313|EMBL:EYR79622.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glycerol-3-phosphate regulon repressor
SCNpilot_expt_1000_bf_scaffold_1637_curated_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12445..13215
DNA (771bp) protein (257aa)
Short-chain dehydrogenase/reductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LN78_RHITR
short-chain dehydrogenase/reductase
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:AGB72697.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1637_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13235..14128
DNA (894bp) protein (298aa)
Hydrogen peroxide-inducible activator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZ91_9RHIZ
Hydrogen peroxide-inducible activator {ECO:0000313|EMBL:EYR79619.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
LysR-type transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1637_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14298..14777
DNA (480bp) protein (160aa)
Formate dehydrogenase protein, gamma subunit {ECO:0000313|EMBL:EYR79618.1}; EC=1.2.1.2 {ECO:0000313|EMBL:EYR79618.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Formate dehydrogenase protein, gamma subunit n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQ64_9RHIZ
formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit
SCNpilot_expt_1000_bf_scaffold_1637_curated_16
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15179..16303
DNA (1125bp) protein (375aa)
fdsB; Putative formate dehydrogenase beta subunit (EC:1.2.1.2)
formate dehydrogenase subunit beta n=1 Tax=Rhizobium meliloti RepID=UPI000302B492
Formate dehydrogenase subunit beta {ECO:0000313|EMBL:EPR20027.1}; TaxID=1336745 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter DSM 30147.;"
SCNpilot_expt_1000_bf_scaffold_1637_curated_17
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16309..18807
DNA (2499bp) protein (833aa)
Formate dehydrogenase, alpha subunit n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LN75_RHITR
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:AGB72692.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
formate dehydrogenase, alpha subunit
Displaying 17 items

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