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SCNpilot_expt_1000_bf_scaffold_1483_curated

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Displaying items 1-30 of 51 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1483_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..228
DNA (228bp) protein (76aa)
membrane protein n=1 Tax=Rhizobium meliloti RepID=UPI0003607755
Uncharacterized protein {ECO:0000313|EMBL:EYR80937.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_2
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(289..603)
DNA (315bp) protein (105aa)
antibiotic biosynthesis monooxygenase n=1 Tax=Rhizobium mongolense RepID=UPI0003B7174E
Antibiotic biosynthesis monooxygenase protein {ECO:0000313|EMBL:AJD42185.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
antibiotic biosynthesis monooxygenase; K07145
SCNpilot_expt_1000_bf_scaffold_1483_curated_3
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(640..900)
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF122 RepID=J2IM64_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJL57055.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_4
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(893..1300)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Rhizobium mongolense RepID=UPI0003B5879E
Uncharacterized protein {ECO:0000313|EMBL:EJL57056.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_5
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1515..2819)
DNA (1305bp) protein (435aa)
TonB family protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HGP7_9RHIZ
TonB family protein {ECO:0000313|EMBL:EPE97230.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
TonB family protein; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_1483_curated_6
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2886..3308)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZZN5_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACI56283.1}; Flags: Precursor;; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_7
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3485..3667
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A985_RHIFH
hypothetical protein
Monooxygenase {ECO:0000313|EMBL:KEA06020.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_8
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3675..4727
DNA (1053bp) protein (351aa)
iron transporter n=1 Tax=Rhizobium sp. 42MFCr.1 RepID=UPI000377ADB5
Hemin transport/degradation protein HmuS {ECO:0000313|EMBL:AJD42191.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
hmuS; heme iron transport component; K07225 putative hemin transport protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4742..5629
DNA (888bp) protein (296aa)
Periplasmic binding protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM2304) RepID=B5ZZN8_RHILW
periplasmic binding protein; K02016 iron complex transport system substrate-binding protein
Periplasmic binding protein {ECO:0000313|EMBL:ACI56286.1}; Flags: Precursor;; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_10
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5633..6757
DNA (1125bp) protein (375aa)
heme ABC transporter permease n=1 Tax=Rhizobium leguminosarum RepID=UPI000374EF52
HmuU protein {ECO:0000313|EMBL:CAC34394.1}; TaxID=384 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum.;"
ABC transporter permease; K02015 iron complex transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6763..7551
DNA (789bp) protein (263aa)
hmuV; hemin importer ATP-binding subunit; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
Hemin import ATP-binding protein HmuV {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041307}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01718, ECO:0000256|SAAS:SAAS00041330};; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
iron ABC transporter n=1 Tax=Rhizobium leguminosarum RepID=UPI00036E4B70
SCNpilot_expt_1000_bf_scaffold_1483_curated_12
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7687..8034
DNA (348bp) protein (116aa)
membrane protein n=1 Tax=Rhizobium sp. JGI 0001005-H05 RepID=UPI000375ACC7
Uncharacterized protein {ECO:0000313|EMBL:CDM58800.1}; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_13
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8040..8450
DNA (411bp) protein (137aa)
Uncharacterized protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LPX6_RHITR
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB72120.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8755..9312)
DNA (558bp) protein (186aa)
RNA polymerase sigma factor n=3 Tax=Rhizobium leguminosarum RepID=C6AUF3_RHILS
RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9320..9529)
DNA (210bp) protein (70aa)
Uncharacterized protein n=3 Tax=Rhizobium RepID=B5ZZP4_RHILW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EJB05836.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_16
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9805..10599
DNA (795bp) protein (265aa)
Two-component response regulator n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HVQ5_9RHIZ
Two-component response regulator {ECO:0000313|EMBL:EPE97241.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
response regulator protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_17
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10758..11774
DNA (1017bp) protein (339aa)
Two-component sensor histidine kinase protein n=1 Tax=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) RepID=B9J871_AGRRK
tcrY; two-component sensor histidine kinase
Two-component sensor histidine kinase protein {ECO:0000313|EMBL:ACM27392.1}; TaxID=311403 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium radiobacter (strain K84 / ATCC BAA-868).;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_18
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12263..13624
DNA (1362bp) protein (454aa)
oxidoreductase (EC:1.4.1.13); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
Probable NADPH-dependent glutamate synthase protein, small chain {ECO:0000313|EMBL:ACE92469.1}; EC=1.4.1.13 {ECO:0000313|EMBL:ACE92469.1};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
Probable NADPH-dependent glutamate synthase protein, small chain n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PX88_RHIE6
SCNpilot_expt_1000_bf_scaffold_1483_curated_19
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13638..14951
DNA (1314bp) protein (438aa)
Dihydropyrimidine dehydrogenase {ECO:0000313|EMBL:KDP74869.1}; EC=1.3.1.1 {ECO:0000313|EMBL:KDP74869.1};; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
pydA; dihydropyrimidine dehydrogenase (EC:1.3.1.1)
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBA3_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1483_curated_20
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15330..17036
DNA (1707bp) protein (569aa)
putative adenylate/guanylate cyclase; K01768 adenylate cyclase [EC:4.6.1.1]
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003731EBB
Adenylate cyclase {ECO:0000313|EMBL:AHK45209.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17011..17652)
DNA (642bp) protein (214aa)
HTH-type transcriptional regulator RutR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYT8_9RHIZ
Putative transcriptional regulator, TetR family {ECO:0000313|EMBL:AHK45210.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
Transcription regulator TetR family
SCNpilot_expt_1000_bf_scaffold_1483_curated_22
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18230..19183
DNA (954bp) protein (318aa)
allantoate amidohydrolase (EC:3.5.1.-)
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:AEG05181.1}; EC=3.5.1.87 {ECO:0000313|EMBL:AEG05181.1};; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
Allantoate amidohydrolase n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0PE63_RHIML
SCNpilot_expt_1000_bf_scaffold_1483_curated_23
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19319..20773
DNA (1455bp) protein (485aa)
D-hydantoinase/dihydropyrimidinase {ECO:0000313|EMBL:CCF20250.1}; EC=3.5.2.2 {ECO:0000313|EMBL:CCF20250.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
dht; phenylhydantoinase; K01464 dihydropyrimidinase [EC:3.5.2.2]
D-hydantoinase/dihydropyrimidinase n=1 Tax=Rhizobium sp. RepID=L0NGR0_RHISP
SCNpilot_expt_1000_bf_scaffold_1483_curated_24
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20776..21147
DNA (372bp) protein (124aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DNG8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EJT04621.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_25
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21171..21584)
DNA (414bp) protein (138aa)
cupin n=1 Tax=Rhizobium giardinii RepID=UPI0003729D70
Cupin 2 domain-containing protein {ECO:0000313|EMBL:AIC28644.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
cupin 2 domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_26
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21753..22544
DNA (792bp) protein (264aa)
ABC transporter-like n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY43_9RHIZ
ABC transporter-like protein {ECO:0000313|EMBL:EYR80901.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter-like protein; K02049 NitT/TauT family transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_27
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22638..23042
DNA (405bp) protein (135aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI00038277CA
Membrane protein {ECO:0000313|EMBL:KGD99958.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1483_curated_28
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23126..23860
DNA (735bp) protein (245aa)
ABC transporter permease n=1 Tax=Rhizobium meliloti RepID=UPI0003752792
ABC transporter; K02050 NitT/TauT family transport system permease protein
Nitrate ABC transporter transmembrane protein {ECO:0000313|EMBL:EKF60234.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_1483_curated_29
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23857..24723
DNA (867bp) protein (289aa)
ABC transporter, membrane spanning protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDT2_9RHIZ
ABC transporter, membrane spanning protein {ECO:0000313|EMBL:AHK45217.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_1483_curated_30
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24739..25731
DNA (993bp) protein (331aa)
ABC-type nitrate/sulfonate/bicarbonate transportsystems periplasmic components-like protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3XC49_RHIFR
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein-like protein
ABC-type nitrate/sulfonate/bicarbonate transportsystems periplasmic components-like protein {ECO:0000313|EMBL:AFL53455.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
Displaying items 1-30 of 51 in total

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