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SCNpilot_expt_1000_bf_scaffold_2664_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2664_curated_1
RIFOXYA1_FULL_Rhodanobacter_67_6_curated, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(51..248)
DNA (198bp) protein (66aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HUK8_9RHIZ
Tax=RIFOXYA1_FULL_Rhodanobacter_67_6_curated
SCNpilot_expt_1000_bf_scaffold_2664_curated_2
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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523..726
DNA (204bp) protein (68aa)
sulfurtransferase n=1 Tax=Martelella mediterranea RepID=UPI00036DD547
Sulfurtransferase {ECO:0000313|EMBL:EZQ13526.1}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas bauzanensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2664_curated_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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809..1822
DNA (1014bp) protein (338aa)
Membrane fusion protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0AZW8_9RHIZ
Membrane protein {ECO:0000313|EMBL:KGD96969.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
membrane fusion protein
SCNpilot_expt_1000_bf_scaffold_2664_curated_4
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1819..5085
DNA (3267bp) protein (1089aa)
multidrug transporter AcrB n=1 Tax=Martelella mediterranea RepID=UPI00037F372E
Multidrug transporter AcrB {ECO:0000313|EMBL:KGD96970.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
acriflavin resistance protein
SCNpilot_expt_1000_bf_scaffold_2664_curated_5

Not on your lists

comp(5321..7054)
DNA (1734bp) protein (578aa)
betA1; choline dehydrogenase BetA (EC:1.1.99.1)
Putative glucose-methanol-choline oxidoreductase n=1 Tax=uncultured bacterium RepID=U6C3L6_9BACT
Putative glucose-methanol-choline oxidoreductase {ECO:0000313|EMBL:BAO02637.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_expt_1000_bf_scaffold_2664_curated_6
Thiolapillus brandeum, Thiolapillus, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7078..8568)
DNA (1491bp) protein (497aa)
Thiolapillus brandeum DNA, complete genome {ECO:0000313|EMBL:BAO44004.1}; EC=1.2.1.3 {ECO:0000313|EMBL:BAO44004.1};; TaxID=1076588 species="Bacteria; Proteobacteria; Gammaproteobacteria; Thiolapillus.;" source="Thiolapillus brandeum.;"
hypothetical protein n=1 Tax=Thiomicrospira arctica RepID=UPI00037B62B9
aldB; aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_2664_curated_7
Burkholderia pyrrocinia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8692..9690)
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003659E4C
AraC family transcriptional regulator {ECO:0000313|EMBL:KFL53683.1}; TaxID=60550 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia pyrrocinia (Pseudomonas pyrrocinia).;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2664_curated_8
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9816..11888)
DNA (2073bp) protein (691aa)
ester cyclase n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6276A
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR63103.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2664_curated_9
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12150..13448
DNA (1299bp) protein (433aa)
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
histidinol dehydrogenase; K00013 histidinol dehydrogenase [EC:1.1.1.23]
histidinol dehydrogenase n=1 Tax=Rhizobium meliloti RepID=UPI0003797E8E
SCNpilot_expt_1000_bf_scaffold_2664_curated_10
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13688..15049)
DNA (1362bp) protein (454aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
hypothetical protein n=1 Tax=Sinorhizobium medicae RepID=UPI0003618C3D
Amidase {ECO:0000313|EMBL:ABR63101.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2664_curated_11
unknown

Not on your lists

comp(15046..15222)
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2664_curated_12
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15234..15929)
DNA (696bp) protein (232aa)
acyl transferase n=1 Tax=Sinorhizobium medicae RepID=UPI00035EBBF2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABR63100.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2664_curated_13
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16003..16974)
DNA (972bp) protein (324aa)
Cupin 2 conserved barrel domain protein n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UHG9_SINMW
cupin
Cupin 2 conserved barrel domain protein {ECO:0000313|EMBL:ABR63099.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2664_curated_14
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17060..18043)
DNA (984bp) protein (328aa)
Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UHG8_SINMW
periplasmic binding protein/LacI transcriptional regulator
Periplasmic binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:ABR63098.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2664_curated_15
unknown

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18338..18895
DNA (558bp) protein (186aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2664_curated_16
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18896..20206)
DNA (1311bp) protein (437aa)
histidinol dehydrogenase (EC:1.1.1.23); K15509 sulfopropanediol 3-dehydrogenase [EC:1.1.1.308]
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Histidinol dehydrogenase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UHG5_SINMW
SCNpilot_expt_1000_bf_scaffold_2664_curated_17
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20258..21322)
DNA (1065bp) protein (355aa)
ABC transporter related n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UHG4_SINMW
ABC transporter-like protein
ABC transporter related {ECO:0000313|EMBL:ABR63094.1}; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2664_curated_18
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21328..22206)
DNA (879bp) protein (293aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UHG3_SINMW
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABR63093.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
SCNpilot_expt_1000_bf_scaffold_2664_curated_19
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22217..23242)
DNA (1026bp) protein (342aa)
ABC transporter permease n=1 Tax=Sinorhizobium medicae RepID=UPI000371E0F0
binding-protein-dependent transport systems inner membrane component
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABR63092.1}; Flags: Precursor;; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Displaying 19 items

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