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SCNpilot_expt_1000_bf_scaffold_1230_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1230_curated_1
RHI_Rhodobacterales_62_75, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..499)
DNA (498bp) protein (166aa)
L-glutamine synthetase (EC:6.3.1.2); K01915 glutamine synthetase [EC:6.3.1.2]
Glutamine synthetase n=1 Tax=uncultured bacterium RepID=K2AEU0_9BACT
Tax=RIFCSPHIGHO2_12_FULL_Rhodobacterales_62_75_curated
SCNpilot_expt_1000_bf_scaffold_1230_curated_2
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(496..1191)
DNA (696bp) protein (232aa)
Transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YH47_9RHIZ
Transcriptional regulator {ECO:0000313|EMBL:EHH08376.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
TetR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1230_curated_3
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1188..2483)
DNA (1296bp) protein (432aa)
Alpha/beta hydrolase fold protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YH48_9RHIZ
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:EHH08377.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
alpha/beta hydrolase fold protein
SCNpilot_expt_1000_bf_scaffold_1230_curated_4
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2488..3798)
DNA (1311bp) protein (437aa)
mmgC7; acyl-CoA dehydrogenase (EC:1.3.99.-)
Acyl-CoA dehydrogenase MmgC n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YH49_9RHIZ
Acyl-CoA dehydrogenase MmgC {ECO:0000313|EMBL:EHH08378.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_expt_1000_bf_scaffold_1230_curated_5
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3823..4875)
DNA (1053bp) protein (351aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YH50_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH08379.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
h16_A2810; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1230_curated_6
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5109..5747)
DNA (639bp) protein (213aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YH51_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHH08380.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1230_curated_7
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5839..6759)
DNA (921bp) protein (307aa)
5-carboxymethyl-2-hydroxymuconate delta-isomerase (EC:5.3.3.10)
Fumarylacetoacetate hydrolase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YH52_9RHIZ
Fumarylacetoacetate hydrolase {ECO:0000313|EMBL:EHH08381.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_expt_1000_bf_scaffold_1230_curated_8
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6772..7893)
DNA (1122bp) protein (374aa)
gentisate 1,2-dioxygenase (EC:1.13.11.4); K00450 gentisate 1,2-dioxygenase [EC:1.13.11.4]
Gentisate 1,2-dioxygenase n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YH53_9RHIZ
Gentisate 1,2-dioxygenase {ECO:0000313|EMBL:EHH08382.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
SCNpilot_expt_1000_bf_scaffold_1230_curated_9
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8031..8717
DNA (687bp) protein (229aa)
GntR family transcriptional regulator n=1 Tax=Mesorhizobium amorphae CCNWGS0123 RepID=G6YH54_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EHH08383.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
bphR; GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1230_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8886..9989)
DNA (1104bp) protein (368aa)
Leu/Ile/Val-binding protein 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0Z5_9RHIZ
ABC-type branched-chain amino acid transport system periplasmic component {ECO:0000313|EMBL:EYR79781.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
braC1; amino acid ABC transporter, substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1230_curated_11
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10297..10851
DNA (555bp) protein (185aa)
Putative threonine efflux protein-like protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X975_RHIFR
threonine efflux protein-like protein
Putative threonine efflux protein-like protein {ECO:0000313|EMBL:AFL52431.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_1230_curated_12
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10991..11965
DNA (975bp) protein (325aa)
2-nitropropane dioxygenase (EC:1.13.12.16)
2-nitropropane dioxygenase {ECO:0000313|EMBL:AGT09789.1}; EC=1.13.12.16 {ECO:0000313|EMBL:AGT09789.1};; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
2-nitropropane dioxygenase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XQV9_PARAH
SCNpilot_expt_1000_bf_scaffold_1230_curated_13
Brucella pinnipedialis, Brucella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12013..12645
DNA (633bp) protein (211aa)
Predicted protein n=6 Tax=Brucella RepID=C9U1K1_BRUPB
TetR family transcriptional regulator
Uncharacterized protein {ECO:0000313|EMBL:EEZ29057.1}; TaxID=520462 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella.;" source="Brucella pinnipedialis M292/94/1.;"
SCNpilot_expt_1000_bf_scaffold_1230_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12884..15112
DNA (2229bp) protein (743aa)
methyl-accepting chemotaxis protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000372574F
mcpX; Chemoreceptor mcpA Methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
Chemoreceptor mcpA Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CCE94557.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_1230_curated_15
Rhizobium sp. R2-400B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15116..15550)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q1B0_9RHIZ
Calpastatin {ECO:0000313|EMBL:KEQ09688.1}; TaxID=1509404 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R2-400B4.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1230_curated_16
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15796..16716
DNA (921bp) protein (307aa)
Chaperone DnaJ protein n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LGE3_RHITR
chaperone DnaJ protein
Chaperone DnaJ protein {ECO:0000313|EMBL:AGB70468.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1230_curated_17
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16720..17037
DNA (318bp) protein (106aa)
Uncharacterized protein n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3H886_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EPE94829.1}; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1230_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17382..18278)
DNA (897bp) protein (299aa)
DNA translocase FtsK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMN0_9RHIZ
DNA segregation ATPase FtsK {ECO:0000313|EMBL:EYR77481.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsK1; cell division protein; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
SCNpilot_expt_1000_bf_scaffold_1230_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18311..20167)
DNA (1857bp) protein (619aa)
DNA translocase FtsK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMN0_9RHIZ
DNA segregation ATPase FtsK {ECO:0000313|EMBL:EYR77481.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ftsK; DNA translocase FtsK
SCNpilot_expt_1000_bf_scaffold_1230_curated_20
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20345..20752)
DNA (408bp) protein (136aa)
UPI0003CF2FC8 related cluster n=1 Tax=unknown RepID=UPI0003CF2FC8
Uncharacterized protein {ECO:0000313|EMBL:ESY87423.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1230_curated_21
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20787..21659
DNA (873bp) protein (291aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=J0HB52_RHILT
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJB07645.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1230_curated_22
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21824..22966
DNA (1143bp) protein (381aa)
Plasmid partitioning protein RepA n=2 Tax=Rhizobium leguminosarum bv. trifolii RepID=B6A207_RHILW
plasmid partitioning protein RepA
Plasmid partitioning protein RepA {ECO:0000313|EMBL:ACI58641.1}; TaxID=395492 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM2304).;"
Displaying 22 items

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