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SCNpilot_expt_1000_bf_scaffold_4624_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4624_curated_1
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1582
DNA (1581bp) protein (527aa)
fdoG; formate dehydrogenase,major subunit (formate dehydrogenase alpha subunit) (EC:1.2.1.2)
FdoG formate dehydrogenase-O alpha subunit n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FSM6_RHIML
FdoG formate dehydrogenase-O alpha subunit {ECO:0000313|EMBL:EHK79976.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_4624_curated_2
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1579..2550
DNA (972bp) protein (324aa)
Formate dehydrogenase subunit beta n=1 Tax=Sinorhizobium meliloti CCNWSX0020 RepID=H0FSM5_RHIML
Formate dehydrogenase {ECO:0000313|EMBL:KGD87297.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
formate dehydrogenase subunit beta; K00124 formate dehydrogenase, beta subunit
SCNpilot_expt_1000_bf_scaffold_4624_curated_3
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2550..3236
DNA (687bp) protein (229aa)
Formate dehydrogenase subunit gamma n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HF38_9RHIZ
Formate dehydrogenase {ECO:0000313|EMBL:KGD87298.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
fdoI; formate dehydrogenase subunit gamma; K00127 formate dehydrogenase, gamma subunit
SCNpilot_expt_1000_bf_scaffold_4624_curated_4
unknown

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comp(3179..3775)
DNA (597bp) protein (199aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4624_curated_5
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3931..4179
DNA (249bp) protein (83aa)
Protein FdhE homolog n=1 Tax=Rhizobium grahamii CCGE 502 RepID=S3HDC3_9RHIZ
Protein FdhE homolog {ECO:0000256|HAMAP-Rule:MF_00611}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
fdhE; Formate dehydrogenase accessory protein FdhE; K02380 FdhE protein
SCNpilot_expt_1000_bf_scaffold_4624_curated_6
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5548..7488
DNA (1941bp) protein (647aa)
Selenocysteine-specific translation elongation factor n=2 Tax=Rhizobium meliloti RepID=F6BWS6_SINMB
Translation elongation factor {ECO:0000313|EMBL:KGD87302.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
selenocysteine-specific translation elongation factor; K03833 selenocysteine-specific elongation factor
SCNpilot_expt_1000_bf_scaffold_4624_curated_7
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7709..8050)
DNA (342bp) protein (114aa)
Uncharacterized protein n=2 Tax=Rhizobium meliloti RepID=M4MG90_RHIML
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAK64671.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_4624_curated_8
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8106..9152)
DNA (1047bp) protein (349aa)
selenium donor protein (EC:2.7.9.3)
Selenide, water dikinase {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883}; EC=2.7.9.3 {ECO:0000256|HAMAP-Rule:MF_00625, ECO:0000256|SAAS:SAAS00014883};; Selenium donor protein {ECO:0000256|HAMAP-Rule:MF_00625}; Selenophosphate synthase {ECO:0000256|HAMAP-Rule:MF_00625}; TaxID=698936 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain BL225C).;"
Selenide, water dikinase n=1 Tax=Sinorhizobium meliloti GR4 RepID=M4IKX1_RHIML
SCNpilot_expt_1000_bf_scaffold_4624_curated_9
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9267..9830
DNA (564bp) protein (188aa)
flavin-dependent oxidoreductase, putative chromate reductase (EC:1.6.5.2)
Flavin-dependent oxidoreductase, putative chromate reductase {ECO:0000313|EMBL:ACS43704.1}; EC=1.6.5.2 {ECO:0000313|EMBL:ACS43704.1};; TaxID=272630 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1).;"
Flavin-dependent oxidoreductase, putative chromate reductase n=1 Tax=Methylobacterium extorquens (strain ATCC 14718 / DSM 1338 / AM1) RepID=C5B5H2_METEA
SCNpilot_expt_1000_bf_scaffold_4624_curated_10
Rhodospirillum centenum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9879..11528)
DNA (1650bp) protein (550aa)
Alkaline protease, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IYG8_RHOCS
Alkaline protease, putative
Alkaline protease, putative {ECO:0000313|EMBL:ACJ01342.1}; TaxID=414684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum centenum (strain ATCC 51521 / SW).;"
SCNpilot_expt_1000_bf_scaffold_4624_curated_11
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12956..13537
DNA (582bp) protein (194aa)
NADH-quinone oxidoreductase subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01356};; NADH dehydrogenase I subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; NDH-1 subunit B {ECO:0000256|HAMAP-Rule:MF_01356}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
nuoB1; NADH dehydrogenase subunit B; K00331 NADH-quinone oxidoreductase subunit B [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit B n=1 Tax=Rhizobium sp. CF080 RepID=J3CKR5_9RHIZ
SCNpilot_expt_1000_bf_scaffold_4624_curated_12
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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13557..14159
DNA (603bp) protein (201aa)
nuoC1; NADH dehydrogenase subunit C; K00332 NADH-quinone oxidoreductase subunit C [EC:1.6.5.3]
NADH-quinone oxidoreductase subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01357};; NADH dehydrogenase I subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; NDH-1 subunit C {ECO:0000256|HAMAP-Rule:MF_01357}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
NADH-quinone oxidoreductase subunit C n=2 Tax=Rhizobium/Agrobacterium group RepID=NUOC_AGRRK rbh
SCNpilot_expt_1000_bf_scaffold_4624_curated_13
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14319..15509
DNA (1191bp) protein (397aa)
NADH-quinone oxidoreductase subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_01358};; NADH dehydrogenase I subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; NDH-1 subunit D {ECO:0000256|HAMAP-Rule:MF_01358}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
NADH-quinone oxidoreductase subunit D n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LHQ8_RHITR
nuoD; NADH-quinone oxidoreductase subunit d
SCNpilot_expt_1000_bf_scaffold_4624_curated_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15509..15766
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Rhizobium/Agrobacterium group RepID=B9JD46_AGRRK
Hypothetical signal peptide protein {ECO:0000313|EMBL:CDN53537.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4624_curated_15
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15784..16608
DNA (825bp) protein (275aa)
nuoe1; NADH dehydrogenase I subunit E; K00334 NADH-quinone oxidoreductase subunit E [EC:1.6.5.3]
NADH-quinone oxidoreductase, E subunit n=1 Tax=Rhizobium sp. CF080 RepID=J2KKM4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGD99574.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
SCNpilot_expt_1000_bf_scaffold_4624_curated_16
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16685..17848
DNA (1164bp) protein (388aa)
nuoF; NADH dehydrogenase I subunit F; K00335 NADH-quinone oxidoreductase subunit F [EC:1.6.5.3]
NADH dehydrogenase I chain F n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JVF0_AGRVS
NADH-quinone oxidoreductase chain F 1 {ECO:0000313|EMBL:AHK44018.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
Displaying 16 items

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