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SCNpilot_expt_1000_bf_scaffold_1367_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1367_curated_1
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..1341)
DNA (1341bp) protein (447aa)
DNA/RNA helicase, superfamily II (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2Q9Y5_9RHIZ
Helicase domain-containing protein {ECO:0000313|EMBL:EUC00091.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
putative ATP-dependent RNA and DNA helicase and translation initiation factor 2 (IF-2; GTPase)
SCNpilot_expt_1000_bf_scaffold_1367_curated_2
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1653..1808
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J3ASB4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CDN49951.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1367_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1870..2121
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRN2_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR82983.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
17 kDa surface antigen
SCNpilot_expt_1000_bf_scaffold_1367_curated_4
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2195..2920)
DNA (726bp) protein (242aa)
phbB; acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis; K00023 acetoacetyl-CoA reductase [EC:1.1.1.36]
Acetoacetyl-CoA reductase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2R0K6_9RHIZ
Acetoacetyl-CoA reductase {ECO:0000313|EMBL:EKF61317.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_1367_curated_5
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3075..4256)
DNA (1182bp) protein (394aa)
phbA-2; acetyl-CoA acetyltransferase 2 (EC:2.3.1.9)
Acetyl-CoA acetyltransferase 2 {ECO:0000313|EMBL:AGS24483.1}; EC=2.3.1.9 {ECO:0000313|EMBL:AGS24483.1};; TaxID=1328306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. Mim1.;"
Acetyl-CoA acetyltransferase 2 n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S2Q7_RHIET
SCNpilot_expt_1000_bf_scaffold_1367_curated_6
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4489..5064
DNA (576bp) protein (192aa)
polyhydroxyalkanoate synthesis repressor PhaR n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI0003744455
Carbon flux regulator protein {ECO:0000313|EMBL:KEC74801.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
polyhydroxyalkonate synthesis repressor PhaR
SCNpilot_expt_1000_bf_scaffold_1367_curated_7
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5180..5587)
DNA (408bp) protein (136aa)
Uncharacterized protein n=2 Tax=Rhizobium etli RepID=S5S106_RHIET
hypothetical protein
Hypothetical conserved protein {ECO:0000313|EMBL:ABC92760.1}; TaxID=347834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CFN 42 / ATCC 51251).;"
SCNpilot_expt_1000_bf_scaffold_1367_curated_8
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5812..6636)
DNA (825bp) protein (275aa)
2,5-didehydrogluconate reductase (EC:1.1.1.274)
Probable 2,5-didehydrogluconate reductase protein {ECO:0000313|EMBL:ACE93178.1}; EC=1.1.1.274 {ECO:0000313|EMBL:ACE93178.1};; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
oxidoreductase n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI0003608EDF
SCNpilot_expt_1000_bf_scaffold_1367_curated_9
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6999..7682
DNA (684bp) protein (228aa)
Two component response regulator n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JUD9_AGRVS
Response regulator protein {ECO:0000313|EMBL:AJD43184.1}; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
mtrA; two component response regulator
SCNpilot_expt_1000_bf_scaffold_1367_curated_10
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7748..8206
DNA (459bp) protein (153aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2R013_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF61202.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
cAMP-dependent kinase
SCNpilot_expt_1000_bf_scaffold_1367_curated_11
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8234..9037)
DNA (804bp) protein (268aa)
xthA3; exodeoxyribonuclease III protein (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
Exodeoxyribonuclease III Xth n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0KGC9_RHILT
Exodeoxyribonuclease III Xth {ECO:0000313|EMBL:EJC76199.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
SCNpilot_expt_1000_bf_scaffold_1367_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9161..9826)
DNA (666bp) protein (222aa)
Conserved hypothetical exported protein n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Q1MAJ2_RHIL3
hypothetical protein
Outer-membrane lipoprotein carrier protein {ECO:0000256|SAAS:SAAS00088851}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1367_curated_13
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9979..12588)
DNA (2610bp) protein (870aa)
DNA translocase ftsK n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q4A8_9RHIZ
DNA translocase ftsK {ECO:0000313|EMBL:CCM77679.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
ftsK2; cell division protein; K03466 DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family
SCNpilot_expt_1000_bf_scaffold_1367_curated_14
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12864..14225)
DNA (1362bp) protein (454aa)
Ammonium transporter n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JUE5_AGRVS
amt; ammonium transporter; K03320 ammonium transporter, Amt family
Ammonium transporter {ECO:0000256|RuleBase:RU362002}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
SCNpilot_expt_1000_bf_scaffold_1367_curated_15
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14251..14589)
DNA (339bp) protein (113aa)
nitrogen regulatory protein P-II 1 n=1 Tax=Rhizobium leguminosarum RepID=UPI0003803539
Nitrogen regulatory protein P-II 1 {ECO:0000313|EMBL:AHF86056.1}; TaxID=754523 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM1689.;"
glnK; nitrogen regulatory protein P-II; K04752 nitrogen regulatory protein P-II 2
SCNpilot_expt_1000_bf_scaffold_1367_curated_16
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14811..15698)
DNA (888bp) protein (296aa)
tesB; acyl-CoA thioesterase II; K10805 acyl-CoA thioesterase II [EC:3.1.2.-]
Acyl-CoA thioesterase II {ECO:0000313|EMBL:CCE97675.1}; EC=3.1.2.- {ECO:0000313|EMBL:CCE97675.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
acyl-CoA thioesterase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037A39AF
SCNpilot_expt_1000_bf_scaffold_1367_curated_17
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15813..17027
DNA (1215bp) protein (405aa)
2-octaprenyl-6-methoxyphenyl hydroxylase; K03185 2-octaprenyl-6-methoxyphenol hydroxylase [EC:1.14.13.-]
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UT47_9RHIZ
Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family {ECO:0000313|EMBL:ENN84885.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
SCNpilot_expt_1000_bf_scaffold_1367_curated_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17034..17222)
DNA (189bp) protein (63aa)
UPF0434 protein RL4569 n=1 Tax=Rhizobium leguminosarum bv. viciae (strain 3841) RepID=Y4569_RHIL3
hypothetical protein; K09791 hypothetical protein
UPF0434 protein RL4569 {ECO:0000255|HAMAP-Rule:MF_01187}; TaxID=216596 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. viciae (strain 3841).;"
SCNpilot_expt_1000_bf_scaffold_1367_curated_19
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17222..17875)
DNA (654bp) protein (218aa)
Putative ATP-dependent protease n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PML3_9RHIZ
Putative ATP-dependent protease {ECO:0000313|EMBL:CCM77686.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
peptidase S16; K07157
SCNpilot_expt_1000_bf_scaffold_1367_curated_20
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17986..18945)
DNA (960bp) protein (320aa)
Thioredoxin n=1 Tax=Rhizobium sp. CF142 RepID=J1SZ13_9RHIZ
Thioredoxin {ECO:0000313|EMBL:EJJ30503.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
trxA2; thioredoxin protein; K05838 putative thioredoxin
SCNpilot_expt_1000_bf_scaffold_1367_curated_21
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19053..19556)
DNA (504bp) protein (168aa)
Uncharacterized protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PJX4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF61213.1}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
YbaK/prolyl-tRNA synthetase associated region
Displaying 21 items

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