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SCNpilot_expt_1000_bf_scaffold_3388_curated

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Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3388_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..1317
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CPE7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83978.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
SCNpilot_expt_1000_bf_scaffold_3388_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1341..2855
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C8K7_9RHIZ
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EYR83977.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K11900 type VI secretion system protein ImpC
SCNpilot_expt_1000_bf_scaffold_3388_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2855..3334
DNA (480bp) protein (160aa)
Type VI secretion system lysozyme-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERG6_9RHIZ
Type VI secretion system lysozyme-like protein {ECO:0000313|EMBL:EYR83976.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
type VI secretion system lysozyme-like protein; K11897 type VI secretion system protein ImpF
SCNpilot_expt_1000_bf_scaffold_3388_curated_4
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3366..4460)
DNA (1095bp) protein (365aa)
Putative transcriptional regulator, LacI family protein n=1 Tax=Sinorhizobium meliloti (strain SM11) RepID=F7XG32_SINMM
putative transcriptional regulator, LacI family protein; K02529 LacI family transcriptional regulator
Putative transcriptional regulator, LacI family protein {ECO:0000313|EMBL:AEH83508.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_3388_curated_5
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4622..5605
DNA (984bp) protein (328aa)
Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Rhizobium meliloti RepID=F6C458_SINMB
Putative galactose ABC transporter,periplasmic solute-binding protein
ABC transporter, periplasmic solute-binding protein {ECO:0000313|EMBL:AEH83509.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_3388_curated_6
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5690..7204
DNA (1515bp) protein (505aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K10441 ribose transport system ATP-binding protein [EC:3.6.3.17]
sugar ABC transporter ATP-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI00037E1C56
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:CAC49320.1}; TaxID=266834 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium meliloti (strain 1021) (Ensifer meliloti) (Sinorhizobium; meliloti).;"
SCNpilot_expt_1000_bf_scaffold_3388_curated_7
Sinorhizobium medicae, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7201..9183
DNA (1983bp) protein (661aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K10440 ribose transport system permease protein
Monosaccharide-transporting ATPase {ECO:0000313|EMBL:ABR63534.1}; EC=3.6.3.17 {ECO:0000313|EMBL:ABR63534.1};; TaxID=366394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium medicae (strain WSM419) (Ensifer medicae).;"
Monosaccharide-transporting ATPase n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6UIQ4_SINMW
SCNpilot_expt_1000_bf_scaffold_3388_curated_8
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9190..10212)
DNA (1023bp) protein (341aa)
luciferase (EC:1.14.14.3)
Luciferase-like, subgroup n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FBZ2_9RHIZ
Luciferase-like, subgroup {ECO:0000313|EMBL:EHS49641.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
SCNpilot_expt_1000_bf_scaffold_3388_curated_9
Rhizobium mesoamericanum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10439..11002
DNA (564bp) protein (188aa)
SNARE associated Golgi protein n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0Q3N9_9RHIZ
SNARE associated Golgi protein {ECO:0000313|EMBL:CCM79017.1}; TaxID=1211777 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium mesoamericanum STM3625.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3388_curated_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11100..11777)
DNA (678bp) protein (226aa)
Fe(3+) ions import ATP-binding protein FbpC {ECO:0000256|HAMAP-Rule:MF_01706}; EC=3.6.3.30 {ECO:0000256|HAMAP-Rule:MF_01706};; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
fbpC; ferric cations import ATP-binding protein FbpC (EC:3.6.3.30); K02010 iron(III) transport system ATP-binding protein [EC:3.6.3.30]
ABC-type spermidine/putrescine transport system, ATPase component n=1 Tax=Rhizobium sp. CF142 RepID=J2KXC1_9RHIZ
SCNpilot_expt_1000_bf_scaffold_3388_curated_11
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12141..13703)
DNA (1563bp) protein (521aa)
ABC-type Fe3+ transport system, permease component n=1 Tax=Rhizobium sp. CF142 RepID=J2AQ98_9RHIZ
ABC-type Fe3+ transport system, permease component {ECO:0000313|EMBL:EJJ25430.1}; Flags: Precursor;; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
fbpB; iron(III)-transport system permease; K02011 iron(III) transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3388_curated_12
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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14307..14696
DNA (390bp) protein (130aa)
Uncharacterized protein {ECO:0000313|EMBL:EZP65302.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
hypothetical protein
Putative uncharacterized protein id=4815861 bin=GWC2_Deltaproteobacteria_55_46 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
SCNpilot_expt_1000_bf_scaffold_3388_curated_13
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14850..15860)
DNA (1011bp) protein (337aa)
ABC-type Fe3+ transport system, periplasmic component n=1 Tax=Rhizobium sp. CF142 RepID=J1T1D5_9RHIZ
Fe(3+) ABC transporter substrate-binding protein FbpA {ECO:0000313|EMBL:AIC29437.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
sfuA; iron(III) ABC transporter substrate-binding protein; K02012 iron(III) transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3388_curated_14
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16032..16361)
DNA (330bp) protein (110aa)
aphA; acid phosphatase/phosphotransferase (EC:3.1.3.2); K03788 acid phosphatase (class B) [EC:3.1.3.2]
HAD superfamily (Subfamily IIIB) phosphatase, TIGR01672 {ECO:0000313|EMBL:ABL72715.1}; EC=3.1.3.2 {ECO:0000313|EMBL:ABL72715.1};; Flags: Precursor;; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
acid phosphatase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F1B0
SCNpilot_expt_1000_bf_scaffold_3388_curated_15
unknown

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comp(17285..17443)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3388_curated_16
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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17881..18861
DNA (981bp) protein (327aa)
ABC taurine transporter, periplasmic ligand binding protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN1_9RHOB
ABC taurine transporter, periplasmic ligand binding protein {ECO:0000313|EMBL:EAQ14972.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
ABC transporter; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_3388_curated_17
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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18913..19713
DNA (801bp) protein (267aa)
ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component-like protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN2_9RHOB
ABC-type nitrate/sulfonate/taurine/bicarbonate transport systems, ATPase component-like protein {ECO:0000313|EMBL:EAQ14973.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
nitrate ABC transporter ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3388_curated_18
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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19716..20495
DNA (780bp) protein (260aa)
Putative taurine ABC transport system permease protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAN0_9RHOB
Putative taurine ABC transport system permease protein {ECO:0000313|EMBL:EAQ14971.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
ABC transporter permease
SCNpilot_expt_1000_bf_scaffold_3388_curated_19
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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20492..21259
DNA (768bp) protein (256aa)
Putative ABC transporter membrane protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VAM9_9RHOB
Putative ABC transporter membrane protein {ECO:0000313|EMBL:EAQ14970.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
SCNpilot_expt_1000_bf_scaffold_3388_curated_20
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22558..22845
DNA (288bp) protein (96aa)
Putative sulfatase n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6NA21_RHOPA
sulfatase
Putative sulfatase {ECO:0000313|EMBL:CAE26808.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
SCNpilot_expt_1000_bf_scaffold_3388_curated_21
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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22970..23935
DNA (966bp) protein (322aa)
Magnesium and cobalt transport protein CorA n=1 Tax=Rhizobium sp. RepID=L0NBR8_RHISP
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
Mg2 transporter protein CorA family protein; K03284 magnesium transporter
SCNpilot_expt_1000_bf_scaffold_3388_curated_22
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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24152..25336
DNA (1185bp) protein (395aa)
branched chain amino-acid ABC transporter substrate-binding protein (EC:3.4.22.34); K01999 branched-chain amino acid transport system substrate-binding protein
Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein n=1 Tax=Puniceispirillum marinum (strain IMCC1322) RepID=D5BRX9_PUNMI
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:KGB82634.1}; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
SCNpilot_expt_1000_bf_scaffold_3388_curated_23
Paracoccus versutus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25478..26281
DNA (804bp) protein (268aa)
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1B903_PARDP
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:KGJ10786.1}; TaxID=34007 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus versutus (Thiobacillus versutus).;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3388_curated_24
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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26278..27003
DNA (726bp) protein (242aa)
ABC transporter related n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WR12_RHOS5
Branched-chain amino acid ABC transporter ATPase {ECO:0000313|EMBL:KDB05432.1}; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_3388_curated_25
unknown

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comp(27067..27261)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3388_curated_26
unknown

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comp(27313..27636)
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3388_curated_27
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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28092..28442
DNA (351bp) protein (117aa)
Inner-membrane translocator n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) RepID=A3PK16_RHOS1
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ABN76682.1}; Flags: Precursor;; TaxID=349101 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9).;"
Displaying 27 items

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