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SCNpilot_expt_1000_bf_scaffold_1642_curated

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1642_curated_1
unknown

Not on your lists

1..120
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1642_curated_2
Mesorhizobium sp. LSJC265A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

122..613
DNA (492bp) protein (164aa)
UPI0003CED8B3 related cluster n=1 Tax=unknown RepID=UPI0003CED8B3
Peptidase {ECO:0000313|EMBL:ESX09920.1}; TaxID=1287322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC265A00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_3
unknown

Not on your lists

702..1406
DNA (705bp) protein (235aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1642_curated_4
unknown

Not on your lists

comp(1450..1695)
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1642_curated_5
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1939..2337)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Sinorhizobium meliloti Rm41 RepID=K0P8H2_RHIML
Uncharacterized protein {ECO:0000313|EMBL:KGE80388.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_6
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2881..3132)
DNA (252bp) protein (84aa)
Antitoxin n=1 Tax=Ochrobactrum sp. EGD-AQ16 RepID=U1YR20_9RHIZ
Addiction module antidote protein {ECO:0000313|EMBL:AIC25376.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
CopG/Arc/MetJ family putative addiction module antidote protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_7
Mesorhizobium sp. LSJC265A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3175..3762)
DNA (588bp) protein (196aa)
UPI0003CEBB81 related cluster n=1 Tax=unknown RepID=UPI0003CEBB81
Resolvase {ECO:0000313|EMBL:ESX09923.1}; TaxID=1287322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC265A00.;"
resolvase domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4872..5468
DNA (597bp) protein (199aa)
ATPase n=1 Tax=Thioalkalivibrio sp. ALMg3 RepID=UPI00035C55EC
ATPase {ECO:0000313|EMBL:KIZ32671.1}; Flags: Fragment;; TaxID=1076 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris.;"
ATPase
SCNpilot_expt_1000_bf_scaffold_1642_curated_9
Leptothrix cholodnii, Leptothrix, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5507..6097
DNA (591bp) protein (197aa)
Putative uncharacterized protein n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y1D3_LEPCP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB34232.1}; TaxID=395495 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Leptothrix.;" source="Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix; discophora (strain SP-6)).;"
SCNpilot_expt_1000_bf_scaffold_1642_curated_10
Rhizobium sp. CF142, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6948..7157
DNA (210bp) protein (70aa)
Cold shock protein n=1 Tax=Rhizobium sp. CF142 RepID=J1ST51_9RHIZ
Cold shock protein {ECO:0000313|EMBL:EJJ28438.1}; TaxID=1144314 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF142.;"
cold shock-like protein cspA; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_1642_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7285..7530
DNA (246bp) protein (82aa)
30S ribosomal protein S21 n=1 Tax=Rhizobium sp. RepID=L0NF12_RHISP
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpsU; 30S ribosomal protein S21; K02970 small subunit ribosomal protein S21
SCNpilot_expt_1000_bf_scaffold_1642_curated_12
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7565..7765
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NFM4_RHISP
Uncharacterized protein {ECO:0000313|EMBL:CCF19664.1}; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_13
unknown

Not on your lists

8282..8458
DNA (177bp) protein (59aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1642_curated_14
unknown

Not on your lists

8716..8850
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1642_curated_15
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8870..10459)
DNA (1590bp) protein (530aa)
Exodeoxyribonuclease 7 large subunit {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195504}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00378, ECO:0000256|SAAS:SAAS00195506};; Exodeoxyribonuclease VII large subunit {ECO:0000256|HAMAP-Rule:MF_00378}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
xseA; exodeoxyribonuclease VII large subunit; K03601 exodeoxyribonuclease VII large subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 large subunit n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UA10_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1642_curated_16
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10629..10892
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. RepID=L0NMD7_RHISP
Uncharacterized protein {ECO:0000313|EMBL:KGD86576.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_17
unknown

Not on your lists

10997..11242
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1642_curated_18
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11249..13099)
DNA (1851bp) protein (617aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2297 RepID=J0CFM7_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC82147.1}; TaxID=754762 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2297.;"
transmembrane protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_19
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13236..14225
DNA (990bp) protein (330aa)
glycosyltransferase (EC:2.4.1.83)
Probable glycosyltransferase protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3PYF3_RHIE6
Glycosyltransferase family 2 protein {ECO:0000313|EMBL:AIC25464.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
SCNpilot_expt_1000_bf_scaffold_1642_curated_20
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14239..14934
DNA (696bp) protein (232aa)
Methylase involved in ubiquinone/menaquinone biosynthesis n=1 Tax=Rhizobium sp. CF080 RepID=J2KEV0_9RHIZ
Methylase involved in ubiquinone/menaquinone biosynthesis {ECO:0000313|EMBL:CDN56717.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
type 11 SAM-dependent methyltransferase
SCNpilot_expt_1000_bf_scaffold_1642_curated_21
Rhizobium sp. CF080, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14939..15301
DNA (363bp) protein (121aa)
EamA-like transporter family n=1 Tax=Rhizobium sp. CF080 RepID=J3CUF9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EUC00567.1}; TaxID=1144310 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF080.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_22
unknown

Not on your lists

15301..15630
DNA (330bp) protein (110aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1642_curated_23
Rhizobium sp. LPU83, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15627..16613)
DNA (987bp) protein (329aa)
Oxidoreductase protein {ECO:0000313|EMBL:CDM56006.1}; EC=1.1.1.18 {ECO:0000313|EMBL:CDM56006.1};; TaxID=348824 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. LPU83.;"
Putative oxidoreductase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LEE4_RHITR
putative oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1642_curated_24
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18130..20328)
DNA (2199bp) protein (733aa)
Bll1925 protein n=3 Tax=Bradyrhizobium RepID=H7C7S0_BRADU
Bll1925 protein {ECO:0000313|EMBL:BAC47190.1}; TaxID=224911 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC; 14792 / USDA 110).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1642_curated_25
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20325..21650)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM2012 RepID=J0VEG4_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJC71696.1}; TaxID=754522 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM2012.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1642_curated_26
Brevundimonas sp. EAKA, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21663..22409)
DNA (747bp) protein (249aa)
Type II restriction enzyme n=1 Tax=Leptospirillum rubarum RepID=A3EW32_9BACT
Restriction endonuclease PaeR7I {ECO:0000313|EMBL:KDP95412.1}; TaxID=1495854 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas sp. EAKA.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_1642_curated_27
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22515..24110)
DNA (1596bp) protein (532aa)
Putative modification methylase n=1 Tax=Leptospirillum rubarum RepID=A3EW33_9BACT
hypothetical protein
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
SCNpilot_expt_1000_bf_scaffold_1642_curated_28
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24556..25086
DNA (531bp) protein (177aa)
antirestriction protein n=1 Tax=Hoeflea sp. 108 RepID=UPI00037EE36D
Antirestriction protein family protein {ECO:0000313|EMBL:EYR84271.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
antirestriction protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_29
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25287..25502
DNA (216bp) protein (72aa)
Hypotheical conserved protein n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2ZAR9_9CAUL
Uncharacterized protein {ECO:0000313|EMBL:KHJ54570.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1642_curated_30
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25549..26070
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F0B6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR84272.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
Displaying items 1-30 of 55 in total

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