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SCNpilot_cont_500_bf_scaffold_554_curated

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_500_bf_scaffold_554_curated_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(656..1828)
DNA (1173bp) protein (391aa)
LldD protein {ECO:0000313|EMBL:KIU44931.1}; EC=1.1.2.3 {ECO:0000313|EMBL:KIU44931.1};; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
L-lactate dehydrogenase; K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
L-lactate dehydrogenase (Cytochrome) n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IAW1_9BRAD
SCNpilot_cont_500_bf_scaffold_554_curated_2
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2133..3476
DNA (1344bp) protein (448aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
glmM; phosphoglucosamine mutase (EC:5.4.2.10); K03431 phosphoglucosamine mutase [EC:5.4.2.10]
Phosphoglucosamine mutase n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P2P1_9BRAD
SCNpilot_cont_500_bf_scaffold_554_curated_3
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3679..3939
DNA (261bp) protein (87aa)
Putative bacterioferritin n=1 Tax=Rhodovulum sp. PH10 RepID=J6UI74_9RHOB
Putative bacterioferritin {ECO:0000313|EMBL:EJW13279.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
bacterioferritin-associated
SCNpilot_cont_500_bf_scaffold_554_curated_4
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4097..4594
DNA (498bp) protein (166aa)
Ferroxidase {ECO:0000256|PIRNR:PIRNR002560}; EC=1.16.3.1 {ECO:0000256|PIRNR:PIRNR002560};; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
Bacterioferritin n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8P589_9BRAD
bfr; bacterioferritin; K03594 bacterioferritin
SCNpilot_cont_500_bf_scaffold_554_curated_5
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4808..5875
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003158371
Porin, opacity type {ECO:0000313|EMBL:ETR77010.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_554_curated_6
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6003..6737
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0003158371
Uncharacterized protein {ECO:0000313|EMBL:EKS29408.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
porin
SCNpilot_cont_500_bf_scaffold_554_curated_7
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6718..7599
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Rhodovulum sp. PH10 RepID=J5PNE3_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EJW11972.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_554_curated_8
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7707..8879
DNA (1173bp) protein (391aa)
Phosphoserine transaminase {ECO:0000256|SAAS:SAAS00182444}; EC=2.6.1.52 {ECO:0000256|SAAS:SAAS00182444};; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
phosphoserine aminotransferase; K00831 phosphoserine aminotransferase [EC:2.6.1.52]
Phosphoserine aminotransferase n=1 Tax=Bradyrhizobium sp. WSM471 RepID=H5YR31_9BRAD
SCNpilot_cont_500_bf_scaffold_554_curated_9
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9025..10608
DNA (1584bp) protein (528aa)
serA2; D-3-phosphoglycerate dehydrogenase SerA (EC:1.1.1.95); K00058 D-3-phosphoglycerate dehydrogenase [EC:1.1.1.95]
D-3-phosphoglycerate dehydrogenase SerA {ECO:0000313|EMBL:AEI05671.1}; EC=1.1.1.95 {ECO:0000313|EMBL:AEI05671.1};; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
D-3-phosphoglycerate dehydrogenase SerA n=2 Tax=Oligotropha carboxidovorans RepID=B6JIP7_OLICO
SCNpilot_cont_500_bf_scaffold_554_curated_10
Bradyrhizobium sp. ORS 375, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10841..12127
DNA (1287bp) protein (429aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=566679 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. ORS 375.;"
purA; adenylosuccinate synthetase (EC:6.3.4.4); K01939 adenylosuccinate synthase [EC:6.3.4.4]
Adenylosuccinate synthetase n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SRE7_9BRAD
SCNpilot_cont_500_bf_scaffold_554_curated_11
Afipia sp. P52-10, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12231..13571
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8I1W0_AZOC5
Uncharacterized protein {ECO:0000313|EMBL:ETR76991.1}; TaxID=1429916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. P52-10.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_554_curated_12
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13647..14558)
DNA (912bp) protein (304aa)
RNA polymerase sigma factor RpoH n=1 Tax=Rhodovulum sp. PH10 RepID=J6UAS6_9RHOB
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rpoH; RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor
SCNpilot_cont_500_bf_scaffold_554_curated_13
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14776..15801)
DNA (1026bp) protein (342aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
rluD; ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Pseudouridine synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J6L9W2_9RHOB
SCNpilot_cont_500_bf_scaffold_554_curated_14
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15836..16204
DNA (369bp) protein (123aa)
Putative uncharacterized protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QF24_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EGP10215.1}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_554_curated_15
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16324..17973
DNA (1650bp) protein (550aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QK35_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE63412.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_500_bf_scaffold_554_curated_trna_1
unknown

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18053..18124
DNA (72bp)
transferRNA
SCNpilot_cont_500_bf_scaffold_554_curated_16
unknown

Not on your lists

comp(18332..18700)
DNA (369bp) protein (123aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_554_curated_17
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18855..19808
DNA (954bp) protein (318aa)
3-methyl-2-oxobutanoate hydroxymethyltransferase (EC:2.1.2.11); K00606 3-methyl-2-oxobutanoate hydroxymethyltransferase [EC:2.1.2.11]
3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Methyloferula stellata RepID=UPI000375933F
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
SCNpilot_cont_500_bf_scaffold_554_curated_18
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19810..20565
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Afipia birgiae RepID=UPI0002FB3A5B
GntR family transcriptional regulator {ECO:0000313|EMBL:EWY39060.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
ydfH; HTH-type transcriptional regulator ydfH
SCNpilot_cont_500_bf_scaffold_554_curated_19
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20584..20883
DNA (300bp) protein (100aa)
Putative uncharacterized protein n=1 Tax=Methylobacterium extorquens DSM 13060 RepID=H1KI37_METEX
Uncharacterized protein {ECO:0000313|EMBL:GAN77132.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_554_curated_20
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20894..21598)
DNA (705bp) protein (235aa)
Putative GntR-family transcriptional regulator n=4 Tax=Bordetella RepID=K0M877_BORPB
GntR family transcriptional regulator
Putative GntR-family transcriptional regulator {ECO:0000313|EMBL:CCN21476.1}; TaxID=1208657 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 1289.;"
SCNpilot_cont_500_bf_scaffold_554_curated_21
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21750..22235
DNA (486bp) protein (162aa)
Uncharacterized protein n=5 Tax=Bordetella RepID=K0MAI6_BORPB
ChrR cupin-like domain protein {ECO:0000313|EMBL:KCV64475.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
hypothetical protein
SCNpilot_cont_500_bf_scaffold_554_curated_22
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22475..23770
DNA (1296bp) protein (432aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q127R0_POLSJ
twin-arginine translocation pathway signal protein
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ABE45232.1}; Flags: Precursor;; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
SCNpilot_cont_500_bf_scaffold_554_curated_23
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23826..24707
DNA (882bp) protein (294aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PGD5_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41692.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
SCNpilot_cont_500_bf_scaffold_554_curated_24
Herminiimonas arsenicoxydans, Herminiimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24704..25666
DNA (963bp) protein (321aa)
Putative ABC-type branched-chain amino acid transport system, permease component n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G273_HERAR
ABC transporter permease
Putative ABC-type branched-chain amino acid transport system, permease component {ECO:0000313|EMBL:CAL60610.1}; TaxID=204773 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herminiimonas.;" source="Herminiimonas arsenicoxydans.;"
SCNpilot_cont_500_bf_scaffold_554_curated_25
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25663..26439
DNA (777bp) protein (259aa)
ABC transporter ATP-binding protein n=1 Tax=Afipia birgiae RepID=UPI0002EBD8F2
Uncharacterized protein {ECO:0000313|EMBL:EKS41694.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_554_curated_26
Afipia broomeae, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26423..27178
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Afipia broomeae ATCC 49717 RepID=K8PQ91_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EKS41695.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;"
ABC transporter ATP-binding protein, putative branched-chain amino acid transport; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_500_bf_scaffold_554_curated_27
Methylobacterium nodulans, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27301..28071
DNA (771bp) protein (257aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AB-629-K02 RepID=UPI0003693BBC
membrane protein with short-chain dehydrogenase/reductase
Putative membrane protein with short-chain dehydrogenase/reductase {ECO:0000313|EMBL:ACL63048.1}; TaxID=460265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium nodulans (strain ORS2060 / LMG 21967).;"
SCNpilot_cont_500_bf_scaffold_554_curated_28
unknown

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28106..28297
DNA (192bp) protein (64aa)

This feature has no annotations

SCNpilot_cont_500_bf_scaffold_554_curated_29
Bradyrhizobium sp. WSM1253, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28404..29378)
DNA (975bp) protein (325aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QPP0_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EIG61746.1}; Flags: Precursor;; TaxID=319003 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM1253.;"
hypothetical protein
Displaying items 1-30 of 45 in total

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