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SCNpilot_expt_1000_bf_scaffold_1110_curated

Search features with annotation key words

Displaying items 1-30 of 63 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1110_curated_1
unknown

Not on your lists

comp(3..218)
DNA (216bp) protein (72aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1110_curated_2
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

331..1371
DNA (1041bp) protein (347aa)
Uncharacterized protein n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0HRC7_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ETX00665.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
alcohol dehydrogenase
SCNpilot_expt_1000_bf_scaffold_1110_curated_3
RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1388..2185
DNA (798bp) protein (266aa)
3-oxoacyl-(Acyl-carrier-protein) reductase n=1 Tax=Pseudonocardia dioxanivorans (strain ATCC 55486 / DSM 44775 / JCM 13855 / CB1190) RepID=F4D040_PSEUX
3-oxoacyl-ACP reductase
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_64_23_curated
SCNpilot_expt_1000_bf_scaffold_1110_curated_4
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2182..2970
DNA (789bp) protein (263aa)
kduD-2; 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 2 (EC:1.1.1.127)
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase 2 n=1 Tax=Rhizobium etli bv. mimosae str. Mim1 RepID=S5S9A2_RHIET
Short-chain dehydrogenase {ECO:0000313|EMBL:KJB95752.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2967..4130
DNA (1164bp) protein (388aa)
Acyl-CoA dehydrogenase domain-containing protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G5P2_ALIDK
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain-containing protein {ECO:0000313|EMBL:AEB84218.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_6
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4134..4910
DNA (777bp) protein (259aa)
Enoyl-CoA hydratase {ECO:0000313|EMBL:ETX02370.1}; EC=4.2.1.17 {ECO:0000313|EMBL:ETX02370.1};; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
enoyl-CoA hydratase (EC:4.2.1.17)
Enoyl-CoA hydratase n=1 Tax=Herbaspirillum frisingense GSF30 RepID=R0FUH4_9BURK
SCNpilot_expt_1000_bf_scaffold_1110_curated_7
R_Betaproteobacteria_64_14, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4916..6085
DNA (1170bp) protein (390aa)
Putative acyl-CoA dehydrogenase (EC:1.3.99.10)
Putative acyl-CoA dehydrogenase n=1 Tax=Pseudomonas putida (strain BIRD-1) RepID=E4RCD0_PSEPB
Tax=RIFCSPLOWO2_02_Betaproteobacteria_64_14_curated
SCNpilot_expt_1000_bf_scaffold_1110_curated_8
Luminiphilus syltensis, Luminiphilus, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6230..6781
DNA (552bp) protein (184aa)
Transcriptional regulator, TetR family n=1 Tax=Luminiphilus syltensis NOR5-1B RepID=B8KQG4_9GAMM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EED35899.1}; TaxID=565045 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade; Luminiphilus.;" source="Luminiphilus syltensis NOR5-1B.;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_9
unknown

Not on your lists

comp(6940..7098)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1110_curated_10
unknown

Not on your lists

comp(7330..7560)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1110_curated_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7895..8812
DNA (918bp) protein (306aa)
Branched-chain amino acid ABC transporter permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NS17_AZOS1
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein; K01998 branched-chain amino acid transport system permease protein
Branched-chain amino acid ABC transporter permease protein {ECO:0000313|EMBL:BAI71196.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_12
Roseivivax isoporae, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8809..9567
DNA (759bp) protein (253aa)
Branched-chain amino acid ABC transporter, ATP-binding protein n=1 Tax=Sulfitobacter sp. EE-36 RepID=A3SFJ4_9RHOB
ABC transporter {ECO:0000313|EMBL:ETX30183.1}; TaxID=1449351 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax isoporae LMG 25204.;"
branched-chain amino acid ABC transporter ATP-binding protein; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1110_curated_13
Burkholderia sp. CCGE1003, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9567..10280
DNA (714bp) protein (238aa)
ABC transporter related protein n=1 Tax=Burkholderia sp. (strain CCGE1003) RepID=E1TKB2_BURSG
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADN61038.1}; TaxID=640512 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. (strain CCGE1003).;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_14
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11201..11491
DNA (291bp) protein (97aa)
hypothetical protein; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-]
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HQB7_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS62100.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_15
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12546..12929
DNA (384bp) protein (128aa)
4-hydroxyphenylacetate 3-monooxygenase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000305BE58
Flavin reductase domain-containing protein {ECO:0000313|EMBL:EHH04593.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
flavin reductase-like, FMN-binding
SCNpilot_expt_1000_bf_scaffold_1110_curated_16
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12957..14462)
DNA (1506bp) protein (502aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 RepID=J2HDL0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGE02084.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1110_curated_17
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14464..14907)
DNA (444bp) protein (148aa)
Tripartite tricarboxylate transporter TctB family n=1 Tax=Rhizobium sp. CF080 RepID=J3B0J8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:KGE02085.1}; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
putative transporter
SCNpilot_expt_1000_bf_scaffold_1110_curated_18
Bordetella parapertussis, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14912..15889)
DNA (978bp) protein (326aa)
Putative exported protein n=3 Tax=Bordetella RepID=Q7WBN5_BORPA
hypothetical protein
Putative exported protein {ECO:0000313|EMBL:CAE36237.1}; TaxID=257311 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253).;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_19
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15989..16948)
DNA (960bp) protein (320aa)
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K69_MESSB
ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1110_curated_20
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17134..17955
DNA (822bp) protein (274aa)
ABC transporter related protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K68_MESSB
ABC transporter
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1110_curated_21
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17952..18731
DNA (780bp) protein (260aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K67_MESSB
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1110_curated_22
RBG_16_Betaproteobacteria_64_18_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18731..19528
DNA (798bp) protein (266aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11K66_MESSB
binding-protein-dependent transport system inner membrane protein
Tax=RBG_16_Betaproteobacteria_64_18_curated
SCNpilot_expt_1000_bf_scaffold_1110_curated_23
Celeribacter indicus, Celeribacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19558..20547
DNA (990bp) protein (330aa)
D-3-phosphoglycerate dehydrogenase (EC:1.1.1.95)
hypothetical protein n=1 Tax=Sinorhizobium medicae RepID=UPI00035D2F5E
D-3-phosphoglycerate dehydrogenase,NAD-binding protein {ECO:0000313|EMBL:AJE47082.1}; TaxID=1208324 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Celeribacter.;" source="Celeribacter indicus.;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_24
Hoeflea sp. BAL378, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20575..21762
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS 375 RepID=H0SPG2_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:KGF69790.1}; TaxID=1547437 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BAL378.;"
peptidase M24
SCNpilot_expt_1000_bf_scaffold_1110_curated_25
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21869..22897)
DNA (1029bp) protein (343aa)
General L-amino acid transport system permease protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TNL2_TISMK
Amino acid ABC transporter permease {ECO:0000313|EMBL:ETW98168.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
aapM; general L-amino acid transport system permease
SCNpilot_expt_1000_bf_scaffold_1110_curated_26
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22866..23648)
DNA (783bp) protein (261aa)
General L-amino acid transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P5G1_AZOS1
bztB; general L-amino acid transport system permease protein; K09970 general L-amino acid transport system permease protein
General L-amino acid transport system permease protein {ECO:0000313|EMBL:BAI75890.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_27
Candidatus Entotheonella sp. TSY1, Candidatus Entotheonella, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24009..25043)
DNA (1035bp) protein (345aa)
amino acid ABC transporter substrate-binding protein n=1 Tax=Uliginosibacterium gangwonense RepID=UPI0003692AA0
Amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETW98170.1}; TaxID=1429438 species="Bacteria; Proteobacteria; Deltaproteobacteria; Candidatus Entotheonella.;" source="Candidatus Entotheonella sp. TSY1.;"
aapJ; general L-amino acid-binding periplasmic protein AapJ; K09969 general L-amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1110_curated_28
Mesorhizobium sp. L103C565B0, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25173..26438)
DNA (1266bp) protein (422aa)
Kynureninase {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800}; EC=3.7.1.3 {ECO:0000256|HAMAP-Rule:MF_01970, ECO:0000256|PIRNR:PIRNR038800};; L-kynurenine hydrolase {ECO:0000256|HAMAP-Rule:MF_01970}; TaxID=1287094 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L103C565B0.;"
UPI0003CFB6C4 related cluster n=1 Tax=unknown RepID=UPI0003CFB6C4
kynU; putative kynureninase
SCNpilot_expt_1000_bf_scaffold_1110_curated_29
Mesorhizobium loti, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26585..27361
DNA (777bp) protein (259aa)
GntR family transcriptional regulator n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DD5393
hypothetical protein
Mlr0625 protein {ECO:0000313|EMBL:BAB48180.1}; TaxID=266835 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Rhizobium loti (strain MAFF303099) (Mesorhizobium loti).;"
SCNpilot_expt_1000_bf_scaffold_1110_curated_30
Herbaspirillum sp. CF444, Herbaspirillum, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27372..28265
DNA (894bp) protein (298aa)
Carboxylic ester hydrolase; EC=3.1.1.-;; Flags: Precursor;; TaxID=1144319 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum sp. CF444.;"
esterase; K01432 arylformamidase [EC:3.5.1.9]
Esterase/lipase n=1 Tax=Herbaspirillum sp. CF444 RepID=J3CY68_9BURK
Displaying items 1-30 of 63 in total

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