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SCNpilot_expt_1000_bf_scaffold_1434_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1434_curated_1
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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620..2035
DNA (1416bp) protein (472aa)
UPI0003CE8D60 related cluster n=1 Tax=unknown RepID=UPI0003CE8D60
Phospholipase D/transphosphatidylase {ECO:0000313|EMBL:CDX45423.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
phospholipase D/transphosphatidylase
SCNpilot_expt_1000_bf_scaffold_1434_curated_2
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2046..4340)
DNA (2295bp) protein (765aa)
Two-component sensor/response regulator hybrid n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HIZ7_9RHIZ
Two-component sensor/response regulator hybrid {ECO:0000313|EMBL:EHK59292.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
two-component sensor/response regulator hybrid rbh
SCNpilot_expt_1000_bf_scaffold_1434_curated_3
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4421..5410)
DNA (990bp) protein (330aa)
Alcohol dehydrogenase GroES-like protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C121_9RHIZ
Alcohol dehydrogenase GroES-like protein {ECO:0000313|EMBL:EIM75523.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
YhdH/YhfP family quinone oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1434_curated_4
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5482..5970)
DNA (489bp) protein (163aa)
lipoprotein signal peptidase; K03101 signal peptidase II [EC:3.4.23.36]
Lipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594}; EC=3.4.23.36 {ECO:0000256|HAMAP-Rule:MF_00161, ECO:0000256|RuleBase:RU000594};; Prolipoprotein signal peptidase {ECO:0000256|HAMAP-Rule:MF_00161}; Signal peptidase II {ECO:0000256|HAMAP-Rule:MF_00161}; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Lipoprotein signal peptidase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8TCP3_MESCW
SCNpilot_expt_1000_bf_scaffold_1434_curated_5
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5970..6818)
DNA (849bp) protein (283aa)
RNA methyltransferase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F365EF
tRNA/rRNA methyltransferase SpoU; K03437 RNA methyltransferase, TrmH family
tRNA/rRNA methyltransferase (SpoU) {ECO:0000313|EMBL:ABG65045.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_1434_curated_6
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6815..7816)
DNA (1002bp) protein (334aa)
SAM dependent methyltransferase; K06969 23S rRNA (cytosine1962-C5)-methyltransferase [EC:2.1.1.191] rbh
SAM-dependent methlyltransferase n=1 Tax=Rhizobium loti RepID=UPI0003605991
SAM dependent methyltransferase {ECO:0000313|EMBL:AID32508.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
SCNpilot_expt_1000_bf_scaffold_1434_curated_7
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7902..8441)
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11C32_MESSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABG65043.1}; Flags: Precursor;; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_1434_curated_8
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8470..9444)
DNA (975bp) protein (325aa)
Ornithine cyclodeaminase {ECO:0000313|EMBL:ESW89888.1}; EC=4.3.1.12 {ECO:0000313|EMBL:ESW89888.1};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
UPI0003CEF19A related cluster n=1 Tax=unknown RepID=UPI0003CEF19A
putative ornithine cyclodeaminase, mu-crystallin
SCNpilot_expt_1000_bf_scaffold_1434_curated_9
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9469..9792)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MRW1_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EKF20067.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1434_curated_10
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9840..10124)
DNA (285bp) protein (95aa)
UPI0003CF91E3 related cluster n=1 Tax=unknown RepID=UPI0003CF91E3
ihfB; integration host factor subunit beta; K05788 integration host factor subunit beta
Integration host factor subunit beta {ECO:0000256|HAMAP-Rule:MF_00381, ECO:0000256|RuleBase:RU003941}; Short=IHF-beta {ECO:0000256|HAMAP-Rule:MF_00381};; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
SCNpilot_expt_1000_bf_scaffold_1434_curated_11
Mesorhizobium australicum, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10192..11160)
DNA (969bp) protein (323aa)
Signal peptide peptidase SppA, 36K type n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KGX4_MESAW
signal peptide peptidase SppA, 36K type
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:AGB44256.1}; Flags: Precursor;; TaxID=754035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073).;"
SCNpilot_expt_1000_bf_scaffold_1434_curated_12
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11445..12140
DNA (696bp) protein (232aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002DBC08F
Putative uncharacterized protein {ECO:0000313|EMBL:EHK59281.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
SCNpilot_expt_1000_bf_scaffold_1434_curated_13
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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12148..12699
DNA (552bp) protein (184aa)
OstA-like protein n=1 Tax=Nitratireductor indicus C115 RepID=K2N9W7_9RHIZ
OstA-like protein {ECO:0000313|EMBL:EKF44408.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
hypothetical protein; K09774 lipopolysaccharide export system protein LptA
SCNpilot_expt_1000_bf_scaffold_1434_curated_14
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12699..13508
DNA (810bp) protein (270aa)
ABC transporter; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter related protein n=1 Tax=Mesorhizobium sp. (strain BNC1) RepID=Q11C39_MESSB
ABC transporter related protein {ECO:0000313|EMBL:ABG65036.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_1434_curated_15
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13656..15140
DNA (1485bp) protein (495aa)
UPI0003CF2D80 related cluster n=1 Tax=unknown RepID=UPI0003CF2D80
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
RNA polymerase sigma-54 factor RpoN; K03092 RNA polymerase sigma-54 factor
SCNpilot_expt_1000_bf_scaffold_1434_curated_16
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15373..15849
DNA (477bp) protein (159aa)
Sigma-54 modulation protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C110_9RHIZ
Sigma-54 modulation protein {ECO:0000313|EMBL:EIM75512.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
ribosomal subunit interface protein
Displaying 16 items

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