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SCNpilot_expt_1000_bf_scaffold_1179_curated

Search features with annotation key words

Displaying items 1-30 of 55 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1179_curated_1
unknown

Not on your lists

comp(1..120)
DNA (120bp) protein (40aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1179_curated_2
Devosia limi, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

575..928
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RF91_PELHB
Uncharacterized protein {ECO:0000313|EMBL:KKB76336.1}; TaxID=1121477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia limi DSM 17137.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_3
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1002..2726
DNA (1725bp) protein (575aa)
Sulfate transporter permease n=1 Tax=Nitratireductor indicus C115 RepID=K2P5C7_9RHIZ
Sulfate:proton symporter {ECO:0000313|EMBL:EXL07846.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
Sulfate transporter permease
SCNpilot_expt_1000_bf_scaffold_1179_curated_4
Pseudomonas bauzanensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2859..3692
DNA (834bp) protein (278aa)
Tryptophan 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Short=TDO {ECO:0000256|HAMAP-Rule:MF_01972};; EC=1.13.11.11 {ECO:0000256|HAMAP-Rule:MF_01972};; Tryptamin 2,3-dioxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan oxygenase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophan pyrrolase {ECO:0000256|HAMAP-Rule:MF_01972}; Tryptophanase {ECO:0000256|HAMAP-Rule:MF_01972}; TaxID=653930 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseud
tryptophan 2,3-dioxygenase; K00453 tryptophan 2,3-dioxygenase [EC:1.13.11.11]
Tryptophan 2,3-dioxygenase n=1 Tax=Rhizobium sp. CF080 RepID=J2RNX6_9RHIZ
SCNpilot_expt_1000_bf_scaffold_1179_curated_5
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3717..4550
DNA (834bp) protein (278aa)
Esterase/lipase n=1 Tax=Rhizobium sp. CF080 RepID=J3B2D7_9RHIZ
Esterase {ECO:0000313|EMBL:ESY68866.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_6
Nitratireductor aquibiodomus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4649..5350
DNA (702bp) protein (234aa)
GntR family transcriptional regulator n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5BX91_9RHIZ
GntR family transcriptional regulator {ECO:0000313|EMBL:EIM74193.1}; TaxID=1189611 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor aquibiodomus RA22.;"
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_1179_curated_7
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5375..6214)
DNA (840bp) protein (280aa)
Esterase/lipase/thioesterase family protein n=2 Tax=Alcaligenes xylosoxydans xylosoxydans RepID=R4XZ06_ALCXX
Uncharacterized protein {ECO:0000313|EMBL:GAK69606.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
esterase/lipase/thioesterase family protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_8
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6204..7148)
DNA (945bp) protein (315aa)
Uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMQ3_9PROT
Uncharacterized protein {ECO:0000313|EMBL:EDP65851.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
hypothetical protein; K15270 S-adenosylmethionine uptake transporter
SCNpilot_expt_1000_bf_scaffold_1179_curated_9
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7135..8310)
DNA (1176bp) protein (392aa)
Zinc carboxypeptidase family protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VG42_9RHOB
Peptidase M14 family protein {ECO:0000313|EMBL:GAK69564.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
carboxypeptidase
SCNpilot_expt_1000_bf_scaffold_1179_curated_10
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8363..9427)
DNA (1065bp) protein (355aa)
Uncharacterized protein n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VG43_9RHOB
Uncharacterized protein {ECO:0000313|EMBL:EAQ12819.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
aldo/keto reductase
SCNpilot_expt_1000_bf_scaffold_1179_curated_11
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9424..9780)
DNA (357bp) protein (119aa)
Putative uncharacterized protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJL7_9RHIZ
Putative uncharacterized protein {ECO:0000313|EMBL:EHK59077.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_12
Chelativorans sp. BNC1, Chelativorans, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9924..11930
DNA (2007bp) protein (669aa)
hydantoinase B/oxoprolinase; K01474 N-methylhydantoinase B [EC:3.5.2.14]
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036E6609
Hydantoinase B/oxoprolinase {ECO:0000313|EMBL:ABG65100.1}; TaxID=266779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Chelativorans.;" source="Chelativorans sp. (strain BNC1).;"
SCNpilot_expt_1000_bf_scaffold_1179_curated_13
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11927..14008
DNA (2082bp) protein (694aa)
N-methylhydantoinase A {ECO:0000313|EMBL:CDP50895.1}; EC=3.5.2.14 {ECO:0000313|EMBL:CDP50895.1};; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
5-oxoprolinase (EC:3.5.2.14); K01473 N-methylhydantoinase A [EC:3.5.2.14]
Hydantoinase/oxoprolinase n=2 Tax=Ketogulonicigenium vulgare RepID=E3F530_KETVY
SCNpilot_expt_1000_bf_scaffold_1179_curated_14
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14127..15635
DNA (1509bp) protein (503aa)
Putative solute-binding component of ABC transporter n=1 Tax=alpha proteobacterium BAL199 RepID=A8TMG6_9PROT
Putative ABC transporter substrate-binding protein {ECO:0000313|EMBL:GAK69565.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
ABC transporter substrate-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_15
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15718..16668
DNA (951bp) protein (317aa)
peptide ABC transporter n=1 Tax=Pseudomonas luteola RepID=UPI00030CA782
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK69602.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
dppB; ABC transporter permease; K02033 peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_16
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16665..17543
DNA (879bp) protein (293aa)
glutathione ABC transporter permease GsiD n=1 Tax=Pseudochrobactrum sp. AO18b RepID=UPI0003A0CFA1
Putative ABC transporter permease protein {ECO:0000313|EMBL:GAK69603.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
peptide/nickel transport system permease protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_17
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18375..19100)
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1TED8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT38061.1}; TaxID=396597 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria MEX-5.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20583..21281
DNA (699bp) protein (233aa)
Enoyl-CoA hydratase/carnithine racemase n=1 Tax=uncultured Rhizobiales bacterium HF4000_48A13 RepID=E0XZ56_9RHIZ
enoyl-CoA hydratase/isomerase
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:ABS63394.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_1179_curated_19
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21387..22169)
DNA (783bp) protein (261aa)
Putative IclR-family regulatory protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MUY1_9BURK
Putative IclR-family regulatory protein {ECO:0000313|EMBL:EIK93021.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
iclR; IclR family regulatory protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_20
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22224..22928)
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002F99873
branched chain amino acid ABC transporter ATPase; K01996 branched-chain amino acid transport system ATP-binding protein
ABC branched chain amino acid transporter, ATPase subunit {ECO:0000313|EMBL:ACM04326.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
SCNpilot_expt_1000_bf_scaffold_1179_curated_21
Sagittula stellata, Sagittula, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22921..23688)
DNA (768bp) protein (256aa)
hypothetical protein n=1 Tax=Hoeflea sp. 108 RepID=UPI000380BD70
ABC branched chain amino acid transporter, ATPase subunit {ECO:0000313|EMBL:EBA06823.1}; TaxID=388399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Sagittula.;" source="Sagittula stellata E-37.;"
branched chain amino acid ABC transporter ATPase; K01995 branched-chain amino acid transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_22
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23685..24656)
DNA (972bp) protein (324aa)
ABC branched chain amino acid transporter, inner membrane subunit n=3 Tax=Rhodobacter RepID=B9KX12_RHOSK
branched-chain amino acid ABC transporter permease; K01998 branched-chain amino acid transport system permease protein
Branched-chain amino acid transport system permease protein livM {ECO:0000313|EMBL:EKX57472.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
SCNpilot_expt_1000_bf_scaffold_1179_curated_23
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24653..25528)
DNA (876bp) protein (292aa)
ABC branched chain amino acid transporter, inner membrane subunit n=4 Tax=Rhodobacter RepID=B9KX11_RHOSK
branched-chain amino acid ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence {ECO:0000313|EMBL:ABA81498.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_expt_1000_bf_scaffold_1179_curated_24
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25525..27120)
DNA (1596bp) protein (532aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003686023
Uncharacterized protein {ECO:0000313|EMBL:KGM49150.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_1179_curated_25
Hoeflea sp. IMCC20628, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27185..28435)
DNA (1251bp) protein (417aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI000318C56D
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:AKH98871.1}; TaxID=1620421 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. IMCC20628.;"
ABC branched chain amino acid transporter, periplasmic ligandbinding protein
SCNpilot_expt_1000_bf_scaffold_1179_curated_26
Pseudooceanicola atlanticus, Pseudooceanicola, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28475..29266)
DNA (792bp) protein (264aa)
enoyl-CoA hydratase/isomerase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003798E5E
Enoyl-CoA hydratase {ECO:0000313|EMBL:KGM49151.1}; TaxID=1461694 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Oceanicola.;" source="Oceanicola sp. 22II-S11g.;"
SCNpilot_expt_1000_bf_scaffold_1179_curated_27
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29263..30183)
DNA (921bp) protein (307aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI0003631E7D
FadE34 {ECO:0000313|EMBL:EAQ12848.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
oxidoreductase
SCNpilot_expt_1000_bf_scaffold_1179_curated_28
Tistrella mobilis, Tistrella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30183..31337)
DNA (1155bp) protein (385aa)
Putative acyl-CoA dehydrogenase yngJ n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TQR5_TISMK
yngJ; putative acyl-CoA dehydrogenase yngJ
Putative acyl-CoA dehydrogenase yngJ {ECO:0000313|EMBL:AFK55103.1}; TaxID=1110502 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Tistrella.;" source="Tistrella mobilis (strain KA081020-065).;"
SCNpilot_expt_1000_bf_scaffold_1179_curated_29
Pseudomonas sp. G5(2012), Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31536..32243
DNA (708bp) protein (236aa)
hypothetical protein n=1 Tax=Martelella mediterranea RepID=UPI00037E7AB9
Short-chain dehydrogenase/reductase {ECO:0000313|EMBL:EPA99403.1}; TaxID=1268068 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. G5(2012).;"
short-chain dehydrogenase/reductase
SCNpilot_expt_1000_bf_scaffold_1179_curated_30
Maritimibacter alkaliphilus, Maritimibacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32251..33372
DNA (1122bp) protein (374aa)
Putative acyl-CoA dehydrogenase n=1 Tax=Maritimibacter alkaliphilus HTCC2654 RepID=A3VG74_9RHOB
Putative acyl-CoA dehydrogenase {ECO:0000313|EMBL:EAQ12850.1}; TaxID=314271 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Maritimibacter.;" source="Maritimibacter alkaliphilus HTCC2654.;"
fadE17; acyl-CoA dehydrogenase
Displaying items 1-30 of 55 in total

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