name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_1062_curated_1
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(610..1800)
|
Glutathione-independent formaldehyde dehydrogenase {ECO:0000313|EMBL:AJD44944.1}; EC=1.2.1.46 {ECO:0000313|EMBL:AJD44944.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
formaldehyde dehydrogenase, glutathione-independent; K00148 glutathione-independent formaldehyde dehydrogenase [EC:1.2.1.46]
aldehyde dismutase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI000381E98E
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_2
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(1967..3073)
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Ferredoxin oxidoreductase protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A9Q7_RHIFH
ferredoxin oxidoreductase protein
Putative dioxygenase reductase subunit {ECO:0000313|EMBL:ACP26388.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
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SCNpilot_expt_1000_bf_scaffold_1062_curated_3
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(3088..4335)
|
Rieske 2Fe-2S family protein {ECO:0000313|EMBL:CCE96979.1}; EC=1.14.12.10 {ECO:0000313|EMBL:CCE96979.1};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Rieske 2Fe-2S family protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A9Q8_RHIFH
Rieske 2Fe-2S family protein; K00479 Rieske 2Fe-2S family protein
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_4
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(4806..5723)
|
Methylisocitrate lyase {ECO:0000256|RuleBase:RU361121}; EC=4.1.3.30 {ECO:0000256|RuleBase:RU361121};; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
prpB; carboxyphosphonoenolpyruvate phosphonomutase (EC:2.7.8.23); K01003 carboxyvinyl-carboxyphosphonate phosphorylmutase [EC:2.7.8.23]
rbh
Carboxyphosphonoenolpyruvate phosphonomutase n=1 Tax=Nitratireductor indicus C115 RepID=K2P245_9RHIZ
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_5
Devosia riboflavina, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(5733..6899)
|
2-methylcitrate synthase/citrate synthase II (EC:2.3.3.5); K01659 2-methylcitrate synthase [EC:2.3.3.5]
Citrate synthase n=1 Tax=Nitratireductor indicus C115 RepID=K2PJV9_9RHIZ
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;"
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SCNpilot_expt_1000_bf_scaffold_1062_curated_6
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(6920..8437)
|
prpD2; 2-methylcitrate dehydratase 2 (EC:4.2.1.79); K01720 2-methylcitrate dehydratase [EC:4.2.1.79]
2-methylcitrate dehydratase n=1 Tax=Nitratireductor indicus C115 RepID=K2N1U3_9RHIZ
2-methylcitrate dehydratase {ECO:0000313|EMBL:EKF41448.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_7
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
8691..10097
|
XRE family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NQ18_9RHIZ
XRE family transcriptional regulator {ECO:0000313|EMBL:EKF41450.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
XRE family transcriptional regulator; K07110
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_8
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
10569..12893
|
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Ph
5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HUJ9_9RHIZ
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_9
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(13086..14117)
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Transcriptional regulator, AraC family n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4F034_9RHIZ
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EHS53959.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
transcriptional regulator protein
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_10
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(14137..15111)
|
ribonucleoside-diphosphate reductase subunit beta; K00526 ribonucleoside-diphosphate reductase beta chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9AJF0_RHIFH
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_11
Phyllobacterium sp. YR531, Phyllobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(15135..17261)
|
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1144343 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Phyllobacterium.;" source="Phyllobacterium sp. YR531.;"
ribonucleotide-diphosphate reductase subunit alpha; K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HUW1_9RHIZ
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_12
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17258..17674)
|
Protein NrdI n=1 Tax=Rhizobium sp. AP16 RepID=J2CSB5_9RHIZ
Protein NrdI {ECO:0000256|HAMAP-Rule:MF_00128, ECO:0000256|SAAS:SAAS00020464}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
nrdI; nrdI protein; K03647 protein involved in ribonucleotide reduction
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_13
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(17687..17908)
|
Glutaredoxin-like protein NrdH Genetic Information Processing n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V4G3_9RHIZ
Glutaredoxin-like protein NrdH Genetic Information Processing {ECO:0000313|EMBL:ENN88775.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
putative glutaredoxin
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_14
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(18608..19537)
|
MexT protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JAE3_OLICO
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AEI04935.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
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SCNpilot_expt_1000_bf_scaffold_1062_curated_15
unknown
|
Not on your lists |
19617..19853
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_16
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(19937..21142)
|
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Rhizobium sp. PDO1-076 RepID=H4FDF1_9RHIZ
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:EHS49142.1}; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_17
Sinorhizobium americanum, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(21139..21795)
|
chemotaxis protein n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00037D6868
mcpA11; chemoreceptor McpA
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:KEC78128.1}; TaxID=1408224 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium americanum CCGM7.;"
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SCNpilot_expt_1000_bf_scaffold_1062_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(22261..23352)
|
Response regulator protein n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2Q281_9RHIZ
Response regulator {ECO:0000313|EMBL:EYR78523.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Response regulator protein; K07814 putative two-component system response regulator
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SCNpilot_expt_1000_bf_scaffold_1062_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(23366..25582)
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Two component sensor kinase/response regulator hybrid n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2PYL0_9RHIZ
Signal transduction histidine kinase {ECO:0000313|EMBL:EYR78522.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two component sensor kinase/response regulator hybrid
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SCNpilot_expt_1000_bf_scaffold_1062_curated_20
Rhizobium sp. H41, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
26561..28489
|
Methyl-accepting chemotaxis protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CX89_AGRT5
Chemotaxis protein {ECO:0000313|EMBL:KGE82917.1}; TaxID=1510041 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. H41.;"
mcpA; methyl-accepting chemotaxis protein; K03406 methyl-accepting chemotaxis protein
rbh
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_21
Rhizobium sp. CF122, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(28533..29267)
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DNA-binding protein with HTH domain-containing protein n=1 Tax=Rhizobium sp. CF122 RepID=J3BL80_9RHIZ
DNA-binding protein with HTH domain-containing protein {ECO:0000313|EMBL:EJL53731.1}; TaxID=1144312 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CF122.;"
regulatory protein luxr; K07782 LuxR family transcriptional regulator
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
29863..30837
|
L-threonine dehydratase catabolic TdcB {ECO:0000313|EMBL:EYR77399.1}; EC=4.3.1.19 {ECO:0000313|EMBL:EYR77399.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
L-threonine dehydratase catabolic TdcB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX21_9RHIZ
pyridoxal phosphate-dependent serine/threonine dehydratase protein
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_23
Pseudomonas sp. AAC, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(30860..31498)
|
TetR family transcriptional regulator n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HXU3_PSEUO
TetR family transcriptional regulator {ECO:0000313|EMBL:KES21671.1}; TaxID=1502784 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. AAC.;"
putative TetR family transcriptional regulator
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_24
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
31724..33826
|
tmd; trimethylamine dehydrogenase (EC:1.5.8.2)
Oxidoreductase, FAD/FMN-binding family n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5EVD2_9RHIZ
Oxidoreductase, FAD/FMN-binding family {ECO:0000313|EMBL:CCV08939.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
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SCNpilot_expt_1000_bf_scaffold_1062_curated_25
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
33833..35092
|
UPI0003CEDB29 related cluster n=1 Tax=unknown RepID=UPI0003CEDB29
MFS transporter {ECO:0000313|EMBL:ESW81970.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
arabinose efflux permease family protein
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_26
Mesorhizobium metallidurans, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
35089..37107
|
Uncharacterized protein n=1 Tax=Mesorhizobium metallidurans STM 2683 RepID=M5FAJ9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:CCV08931.1}; TaxID=1297569 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium metallidurans STM 2683.;"
peptidase S15; K06978
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_27
Ruegeria pomeroyi, Ruegeria, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
37151..38095
|
Dipeptide ABC trasnporter, permease protein n=1 Tax=Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3) RepID=Q5LPL4_RUEPO
dipeptide ABC transporter permease; K02033 peptide/nickel transport system permease protein
Dipeptide ABC trasnporter, permease protein {ECO:0000313|EMBL:AAV96075.1}; TaxID=246200 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria.;" source="Ruegeria pomeroyi (strain ATCC 700808 / DSM 15171 / DSS-3); (Silicibacter pomeroyi).;"
|
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SCNpilot_expt_1000_bf_scaffold_1062_curated_28
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
38097..39005
|
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AAA076-F14 RepID=UPI00036569B0
Dipeptide ABC transporter permease {ECO:0000313|EMBL:ETW10956.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlanticus.;"
dipeptide ABC transporter permease; K02034 peptide/nickel transport system permease protein
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_29
Roseivivax atlanticus, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
39002..39460
|
ABC transporter ATP-binding protein n=1 Tax=Amycolatopsis benzoatilytica RepID=UPI000379464C
Oligopeptide transport ATP-binding protein AppD {ECO:0000313|EMBL:ETW11427.1}; TaxID=1317118 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax atlanticus.;"
peptide ABC transporter ATP-binding protein
|
|
SCNpilot_expt_1000_bf_scaffold_1062_curated_30
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
39424..39918
|
peptide/nickel transport system, ATP-binding protein (EC:3.6.3.-)
Peptide/nickel transport system, ATP-binding protein n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5Y2C4_PARAH
Oligopeptide transporter subunit ATP-binding component of ABC superfamily {ECO:0000313|EMBL:CDX19131.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
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