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SCNpilot_expt_1000_bf_scaffold_1479_curated

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Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1479_curated_1
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..438)
DNA (438bp) protein (146aa)
hypothetical protein n=1 Tax=Amycolatopsis nigrescens RepID=UPI00035E5C3A
Uncharacterized protein {ECO:0000313|EMBL:KKC32802.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1479_curated_2
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(590..1363)
DNA (774bp) protein (258aa)
Transcriptional regulator, DeoR family, putative n=1 Tax=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) RepID=Q166V7_ROSDO
Uncharacterized protein {ECO:0000313|EMBL:KKC32811.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
DeoR family transcriptional regulator; K02081 DeoR family transcriptional regulator, aga operon transcriptional repressor
SCNpilot_expt_1000_bf_scaffold_1479_curated_3
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1499..2626
DNA (1128bp) protein (376aa)
Uncharacterized protein {ECO:0000313|EMBL:KJB92058.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_4
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2649..3833
DNA (1185bp) protein (395aa)
SIS domain protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C183_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KKC32821.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
glucosamine--fructose-6-phosphate aminotransferase
SCNpilot_expt_1000_bf_scaffold_1479_curated_5
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3839..4741
DNA (903bp) protein (301aa)
Kinase, PfkB family n=1 Tax=Clostridium sp. (strain ATCC 29733 / VPI C48-50) RepID=U2EV83_CLOS4
Uncharacterized protein {ECO:0000313|EMBL:KKC32813.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
PfkB domain-containing protein
SCNpilot_expt_1000_bf_scaffold_1479_curated_6
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4735..5466
DNA (732bp) protein (244aa)
Hydantoin racemase (EC:5.1.99.5)
Hydantoin racemase n=1 Tax=Frankia sp. CN3 RepID=G6HDM1_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKC32814.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_7
Frankia sp. EuI1c, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

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5494..7017
DNA (1524bp) protein (508aa)
Amidohydrolase n=1 Tax=Frankia sp. (strain EuI1c) RepID=E3J0K4_FRASU
amidohydrolase
Amidohydrolase {ECO:0000313|EMBL:ADP81633.1}; TaxID=298654 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EuI1c).;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_8
Devosia psychrophila, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7039..7920
DNA (882bp) protein (294aa)
Polysaccharide deacetylase n=1 Tax=Frankia sp. CN3 RepID=G6HDL9_9ACTO
Uncharacterized protein {ECO:0000313|EMBL:KKC32809.1}; TaxID=728005 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia psychrophila.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_1479_curated_9
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8173..8889)
DNA (717bp) protein (239aa)
integrase n=1 Tax=Martelella mediterranea RepID=UPI000361D94E
Transposase {ECO:0000313|EMBL:KAJ34135.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
integrase catalytic region
SCNpilot_expt_1000_bf_scaffold_1479_curated_10
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8886..9167)
DNA (282bp) protein (94aa)
Transposase IS3/IS911 family protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IFR3_XANP2
transposase IS3/IS911 family protein
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:ABS66856.1}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_11
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9682..11073
DNA (1392bp) protein (464aa)
Aminotransferase {ECO:0000313|EMBL:ABP71721.1}; EC=2.6.1.- {ECO:0000313|EMBL:ABP71721.1};; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
Aminotransferase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WWF7_RHOS5
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1479_curated_12
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11101..12591
DNA (1491bp) protein (497aa)
Aldehyde dehydrogenase; K09472 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase [EC:1.2.1.-]
Aldehyde dehydrogenase n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K951_9RHOB
Aldehyde dehydrogenase {ECO:0000313|EMBL:EKX57336.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_13
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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12650..14305
DNA (1656bp) protein (552aa)
AMP-dependent synthetase and ligase n=1 Tax=Rhodobacter sphaeroides WS8N RepID=F3U2P2_RHOSH
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:EKX57335.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
AMP-dependent synthetase and ligase
SCNpilot_expt_1000_bf_scaffold_1479_curated_14
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14307..15377
DNA (1071bp) protein (357aa)
FAD dependent oxidoreductase n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=B9KU30_RHOSK
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACM03558.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_15
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15401..15898
DNA (498bp) protein (166aa)
FAD dependent oxidoreductase n=1 Tax=Rhodobacter sphaeroides (strain KD131 / KCTC 12085) RepID=B9KU30_RHOSK
FAD dependent oxidoreductase
FAD dependent oxidoreductase {ECO:0000313|EMBL:ACM03558.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_16
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15895..16764
DNA (870bp) protein (290aa)
Putative TIM-barrel fold metal-dependent hydrolase n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) RepID=Q3IWF3_RHOS4
hypothetical protein; K07045
Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequence {ECO:0000313|EMBL:ABA81131.1}; TaxID=272943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM; 158).;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_17
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16895..17536
DNA (642bp) protein (214aa)
Transcriptional regulator n=3 Tax=Rhodobacter RepID=B9KU28_RHOSK
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:ACM03556.1}; TaxID=557760 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain KD131 / KCTC 12085).;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_18
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17537..17932)
DNA (396bp) protein (132aa)
Putative AgaE n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6Y0Y2_RHIRD
D-amino acid oxidase {ECO:0000313|EMBL:KGM31364.1}; Flags: Fragment;; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
AgaE protein
SCNpilot_expt_1000_bf_scaffold_1479_curated_19
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18861..19892)
DNA (1032bp) protein (344aa)
Histone deacetylase superfamily n=1 Tax=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) RepID=A4WWG3_RHOS5
histone deacetylase superfamily protein
Histone deacetylase superfamily {ECO:0000313|EMBL:ABP71727.1}; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_20
Rhizobium tropici, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19927..21354)
DNA (1428bp) protein (476aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LTM2_RHITR
glutamyl-tRNA(Gln) amidotransferase subunit A
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000313|EMBL:AGB74056.1}; TaxID=698761 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium tropici CIAT 899.;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_21
Mesorhizobium sp. LNHC229A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21941..22210
DNA (270bp) protein (90aa)
UPI0003CE5611 related cluster n=1 Tax=unknown RepID=UPI0003CE5611
Peptide ABC transporter substrate-binding protein {ECO:0000313|EMBL:ESY89487.1}; TaxID=1287240 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC229A00.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1479_curated_22
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22207..23130
DNA (924bp) protein (308aa)
ABC peptide transporter, periplasmic binding protein n=1 Tax=Rhodobacter sp. AKP1 RepID=L1KAD6_9RHOB
ABC peptide transporter, periplasmic binding protein {ECO:0000313|EMBL:EKX57328.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
Extracellular solute-binding protein, family 5 precursor; K02035 peptide/nickel transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_1479_curated_23
Rhodobacter sphaeroides, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23289..24254
DNA (966bp) protein (322aa)
Binding-protein-dependent transport systems inner membrane component n=5 Tax=Rhodobacter RepID=A3PPK1_RHOS1
binding-protein-dependent transport systems inner membrane component; K02033 peptide/nickel transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABP71731.1}; Flags: Precursor;; TaxID=349102 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3).;"
SCNpilot_expt_1000_bf_scaffold_1479_curated_24
unknown

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comp(24531..24689)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1479_curated_25
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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25330..25542
DNA (213bp) protein (71aa)
hypothetical protein n=1 Tax=Rudaea cellulosilytica RepID=UPI0003643AF5
ABC transporter; K02031 peptide/nickel transport system ATP-binding protein; K02032 peptide/nickel transport system ATP-binding protein
Oligopeptide transport system permease protein OppB {ECO:0000313|EMBL:EKX57324.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
Displaying 25 items

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