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SCNpilot_expt_1000_bf_scaffold_3081_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3081_curated_1
Aquamicrobium defluvii, Aquamicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..109
DNA (108bp) protein (36aa)
ABC transporter related n=1 Tax=Sinorhizobium medicae (strain WSM419) RepID=A6U6B1_SINMW
ABC transporter-like protein; K12372 dipeptide transport system ATP-binding protein
Peptide ABC transporter ATP-binding protein {ECO:0000313|EMBL:EXL09259.1}; TaxID=69279 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Aquamicrobium.;" source="Aquamicrobium defluvii.;"
SCNpilot_expt_1000_bf_scaffold_3081_curated_2
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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245..1276
DNA (1032bp) protein (344aa)
Ammonia monooxygenase n=1 Tax=Agrobacterium tumefaciens 5A RepID=H0HA56_RHIRD
Ammonia monooxygenase {ECO:0000313|EMBL:CDN92025.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
ammonia monooxygenase; K07120
SCNpilot_expt_1000_bf_scaffold_3081_curated_3
Rhizobium freirei, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1364..1897
DNA (534bp) protein (178aa)
Gluconokinase protein n=1 Tax=Rhizobium freirei PRF 81 RepID=N6UFE5_9RHIZ
Gluconokinase protein {ECO:0000313|EMBL:ENN88893.1}; TaxID=363754 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium freirei PRF 81.;"
aroK1; shikimate kinase
SCNpilot_expt_1000_bf_scaffold_3081_curated_4
Mesorhizobium sp. LNHC220B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2036..2959)
DNA (924bp) protein (308aa)
N-dimethylarginine dimethylaminohydrolase n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KT52_MESAW
N-dimethylarginine dimethylaminohydrolase
Amidinotransferase {ECO:0000313|EMBL:ESY81949.1}; TaxID=1287232 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC220B00.;"
SCNpilot_expt_1000_bf_scaffold_3081_curated_5
Mesorhizobium sp. SOD10, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3008..4576)
DNA (1569bp) protein (523aa)
UPI0003CE66E8 related cluster n=1 Tax=unknown RepID=UPI0003CE66E8
Uncharacterized protein {ECO:0000313|EMBL:CDX41040.1}; TaxID=1505946 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. SOD10.;"
metal-dependent amidase/aminoacylase/carboxypeptidase
SCNpilot_expt_1000_bf_scaffold_3081_curated_6
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4717..5613
DNA (897bp) protein (299aa)
Transcriptional regulator, LysR family id=2776815 bin=GWF1_Rhodobacteraceae_65_7 species=unknown genus=Mesorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
LysR family transcriptional regulator
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_3081_curated_7
Mesorhizobium sp. LSJC265A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5744..6823
DNA (1080bp) protein (360aa)
UPI0003CEC707 related cluster n=1 Tax=unknown RepID=UPI0003CEC707
Spermidine/putrescine ABC transporter {ECO:0000313|EMBL:ESX13942.1}; TaxID=1287322 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC265A00.;"
ABC transporter
SCNpilot_expt_1000_bf_scaffold_3081_curated_8
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6907..7974
DNA (1068bp) protein (356aa)
ABC transporter, binding protein id=2776808 bin=GWF1_Rhodobacteraceae_65_7 species=Sinorhizobium medicae genus=Sinorhizobium taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
ABC transporter binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_3081_curated_9
Mesorhizobium sp. LNHC232B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8269..9093
DNA (825bp) protein (275aa)
UPI0003CEA73E related cluster n=1 Tax=unknown RepID=UPI0003CEA73E
Polyamine ABC transporter permease {ECO:0000313|EMBL:ESY69710.1}; TaxID=1287243 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC232B00.;"
ABC-type spermidine/putrescine transport system, permease component I
SCNpilot_expt_1000_bf_scaffold_3081_curated_10
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9100..9903
DNA (804bp) protein (268aa)
Putative ABC transporter permease protein id=2776802 bin=GWF1_Rhodobacteraceae_65_7 species=Roseobacter litoralis genus=Roseobacter taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWF1_Rhodobacteraceae_65_7 organism_group=Alphaproteobacteria organism_desc=Good +
ABC-type spermidine/putrescine transport system, permease component II
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_3081_curated_11
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9923..11596
DNA (1674bp) protein (558aa)
thiamine pyrophosphate binding domain-containing protein; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
Thiamine pyrophosphate binding domain-containing protein n=1 Tax=Ochrobactrum intermedium M86 RepID=M5JRX8_9RHIZ
Thiamine pyrophosphate binding domain-containing protein {ECO:0000313|EMBL:ELT50672.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
SCNpilot_expt_1000_bf_scaffold_3081_curated_12
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11720..12127)
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM597 RepID=I9NM51_RHILT
Uncharacterized protein {ECO:0000313|EMBL:EJB07887.1}; TaxID=754764 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii WSM597.;"
glutathione-dependent formaldehyde-activating protein
SCNpilot_expt_1000_bf_scaffold_3081_curated_13
Rhizobium sp. YS-1r, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12202..12510)
DNA (309bp) protein (103aa)
Sulfate-transporting ATPase {ECO:0000256|SAAS:SAAS00085229}; EC=3.6.3.25 {ECO:0000256|SAAS:SAAS00085229};; TaxID=1532558 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. YS-1r.;"
sulfate ABC transporter ATP-binding protein (EC:3.6.3.25); K02045 sulfate transport system ATP-binding protein [EC:3.6.3.25]
sulfate ABC transporter ATP-binding protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036C420E
Displaying 13 items

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