ggKbase home page

SCNpilot_expt_1000_bf_scaffold_6684_curated_4

Organism: scnpilot_dereplicated_Rhizobium_2

partial RP 36 / 55 MC: 4 BSCG 36 / 51 MC: 5 ASCG 9 / 38 MC: 1
Location: comp(3180..3938)

Top 3 Functional Annotations

Value Algorithm Source
peptide ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI00037760F7 similarity UNIREF
DB: UNIREF100
  • Identity: 74.8
  • Coverage: 222.0
  • Bit_score: 341
  • Evalue 1.00e-90
oppC1; oligopeptide transport system permease OppC similarity KEGG
DB: KEGG
  • Identity: 73.6
  • Coverage: 227.0
  • Bit_score: 331
  • Evalue 1.90e-88
Oligopeptide transport system permease protein OppC {ECO:0000313|EMBL:AFL49657.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 73.6
  • Coverage: 227.0
  • Bit_score: 331
  • Evalue 8.50e-88

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Sinorhizobium fredii → Sinorhizobium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 759
ATGACTGACGCGGCCGCTCCCCGTTCCGTCAAGAGCCGCAGCCTCGTGCAGCTTGCCGCGCTGCGCTTCCGGCGCAACAGGCCGGCACTCGGCGGCCTGATCATGCTTGCCCTGGTCGCCCTGTTCTCCTTTGCCGGCCCTTCCGTCATCGGCCACAGCTACGACCAGGTCTTCCCCTCCTATGTCTCGGTGCCCCCGAGCCTCGAACCGCGGCCGCAGGCCGATACGCTGAAGGACGTCATGGAGGGCGTGGCGACGCGCGCCCGTGTTTCGCTGAAGGAATTTACCGTCGACGGCAACAGTTTTGCCGCCACCGTCACTGCCGAACAGCCGATCGATCCGCGCACGACGCGCTATTTCGATCGCGCCAACGAATTCGACGACACCGAAGTCGCCACCACCGAAGACGAGGGCCGCACCCTGAAACTGACCGGCACCGTGGCACGCGAATATTTCCTGTTCGGCACCGACAGCAACGGCCGCGACCTGCTCGCCCGCGTCATGCTCGGCGGGCAGATCTCGCTTTCCGTCGGCCTGCTGGCGAGCCTCGTGTCGCTGACCATCGGCGTGCTCTACGGCTCGATCTCCGGTTATCTCGGCGGGCGCATCGACAATGTCATGATGCGTTTCGTCGAAATCCTCTATTCGCTGCCCTTCGTTTTCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGACATGGCGCGTATCGTCCGCGGCCAGACGCTCGCCTTGA
PROTEIN sequence
Length: 253
MTDAAAPRSVKSRSLVQLAALRFRRNRPALGGLIMLALVALFSFAGPSVIGHSYDQVFPSYVSVPPSLEPRPQADTLKDVMEGVATRARVSLKEFTVDGNSFAATVTAEQPIDPRTTRYFDRANEFDDTEVATTEDEGRTLKLTGTVAREYFLFGTDSNGRDLLARVMLGGQISLSVGLLASLVSLTIGVLYGSISGYLGGRIDNVMMRFVEILYSLPFVFLXXXXXXXXXXXXXXXXXWTWRVSSAARRSP*