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SCNpilot_expt_1000_bf_scaffold_6684_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6684_curated_1
Rhizobium grahamii, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..1108)
DNA (1107bp) protein (369aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=990285 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium grahamii CCGE 502.;"
two component sensor kinase (EC:2.7.3.-)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI00036DADC1
SCNpilot_expt_1000_bf_scaffold_6684_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1235..2839)
DNA (1605bp) protein (535aa)
Nickel-transporting ATPase (EC:3.6.3.30 3.6.3.24)
peptide ABC transporter ATPase n=1 Tax=Rhizobium meliloti RepID=UPI00037CA60F
ABC oligopeptide transporter, fused ATPase subunits {ECO:0000313|EMBL:AHK45685.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
SCNpilot_expt_1000_bf_scaffold_6684_curated_3
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2842..3216)
DNA (375bp) protein (125aa)
Oligopeptide transport system permease protein OppC n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X1A1_RHIFR
ABC transporter permease; K15582 oligopeptide transport system permease protein
ABC transporter integral membrane protein {ECO:0000313|EMBL:EHK77469.1}; TaxID=1107881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti CCNWSX0020.;"
SCNpilot_expt_1000_bf_scaffold_6684_curated_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3180..3938)
DNA (759bp) protein (253aa)
peptide ABC transporter permease n=1 Tax=Rhizobium giardinii RepID=UPI00037760F7
oppC1; oligopeptide transport system permease OppC
Oligopeptide transport system permease protein OppC {ECO:0000313|EMBL:AFL49657.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_expt_1000_bf_scaffold_6684_curated_5
Agrobacterium tumefaciens, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3931..4182)
DNA (252bp) protein (84aa)
Oligopeptide transporter subunit membrane component of ABC superfamily n=1 Tax=Rhizobium sp. IRBG74 RepID=U4QAU3_9RHIZ
oligopeptide ABC transporter, membrane spanning protein; K15581 oligopeptide transport system permease protein
ABC transporter, membrane spanning protein (Oligopeptide) {ECO:0000313|EMBL:CDN94936.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;"
SCNpilot_expt_1000_bf_scaffold_6684_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4895..6496)
DNA (1602bp) protein (534aa)
ABC transporter substrate-binding protein n=1 Tax=Rhizobium meliloti RepID=UPI000367724C
ABC-type oligopeptide transport system periplasmic component {ECO:0000313|EMBL:EYR78739.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ABC transporter substrate-binding protein; K15580 oligopeptide transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_6684_curated_7
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6633..8408)
DNA (1776bp) protein (592aa)
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000375B08E
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJK78322.1}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
SCNpilot_expt_1000_bf_scaffold_6684_curated_8
unknown

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9046..9168
DNA (123bp) protein (41aa)

This feature has no annotations

Displaying 8 items

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