ggKbase home page

SCNpilot_cont_750_bf_scaffold_593_curated

Search features with annotation key words

Displaying items 1-30 of 68 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_750_bf_scaffold_593_curated_1
Thiocapsa marina, Thiocapsa, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(111..620)
DNA (510bp) protein (170aa)
Methyltransferase FkbM family n=1 Tax=Thiocapsa marina 5811 RepID=F9U967_9GAMM
Methyltransferase FkbM family {ECO:0000313|EMBL:EGV19325.1}; TaxID=768671 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiocapsa.;" source="Thiocapsa marina 5811.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_593_curated_2
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1016..3298)
DNA (2283bp) protein (761aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI000306CB5A
Uncharacterized protein {ECO:0000313|EMBL:EFH13626.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
SCNpilot_cont_750_bf_scaffold_593_curated_3
unknown

Not on your lists

4106..4303
DNA (198bp) protein (66aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_593_curated_4
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4506..4892)
DNA (387bp) protein (129aa)
hypothetical protein n=1 Tax=Roseomonas sp. B5 RepID=UPI0002FC2C09
histone family protein nucleoid-structuring protein H-NS; K03746 DNA-binding protein H-NS
Nucleoid protein H-NS {ECO:0000313|EMBL:ABM39846.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
SCNpilot_cont_750_bf_scaffold_593_curated_5
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7111..9150
DNA (2040bp) protein (680aa)
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HEN5_GLUDA
Uncharacterized protein {ECO:0000313|EMBL:GAN78387.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_593_curated_6
unknown

Not on your lists

comp(9606..9836)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_593_curated_7
Cyanothece sp. CCY0110, Cyanothece, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(10391..11407)
DNA (1017bp) protein (339aa)
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI000380454C
Iron-regulated protein FrpC, putative {ECO:0000313|EMBL:EAZ89049.1}; TaxID=391612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Cyanothece.;" source="Cyanothece sp. CCY0110.;"
hemolysin-type calcium-binding region
SCNpilot_cont_750_bf_scaffold_593_curated_8
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12537..14828
DNA (2292bp) protein (764aa)
chemotaxis protein CheY n=1 Tax=Methylobacterium sp. MB200 RepID=UPI00034C582C
PAS/PAC sensor hybrid histidine kinase
PAS/PAC sensor hybrid histidine kinase {ECO:0000313|EMBL:ACK81210.1}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_cont_750_bf_scaffold_593_curated_9
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14868..17393)
DNA (2526bp) protein (842aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KN38_RHISN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACP21611.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_cont_750_bf_scaffold_593_curated_10
unknown

Not on your lists

comp(18856..19086)
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_593_curated_11
unknown

Not on your lists

19936..20097
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_593_curated_12
R_Acidobacteria_59_13, Acidobacteria, Bacteria

Not on your lists

comp(21971..22792)
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Nocardiopsis valliformis RepID=UPI0003481746
methyltransferase
Tax=RIFCSPLOWO2_02_FULL_Acidobacteria_59_13_curated
SCNpilot_cont_750_bf_scaffold_593_curated_13
Acidiphilium cryptum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24993..25931)
DNA (939bp) protein (313aa)
Plasmid encoded RepA protein n=1 Tax=Acidiphilium cryptum (strain JF-5) RepID=A5FTW2_ACICJ
plasmid encoded RepA protein
Plasmid encoded RepA protein {ECO:0000313|EMBL:ABQ29044.1}; TaxID=349163 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium cryptum (strain JF-5).;"
SCNpilot_cont_750_bf_scaffold_593_curated_14
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26323..26535
DNA (213bp) protein (71aa)
Plasmid encoded RepA protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RK31_9PROT
Plasmid encoded RepA protein {ECO:0000313|EMBL:EFH12340.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
repA; putative replication protein RepA
SCNpilot_cont_750_bf_scaffold_593_curated_15
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26532..26951
DNA (420bp) protein (140aa)
Plasmid encoded RepA protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RK31_9PROT
Plasmid encoded RepA protein {ECO:0000313|EMBL:EFH12340.1}; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
SCNpilot_cont_750_bf_scaffold_593_curated_16
unknown

Not on your lists

comp(27530..27718)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_cont_750_bf_scaffold_593_curated_17
Acetobacter pasteurianus, Acetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27824..28738
DNA (915bp) protein (305aa)
IncW-like replication protein n=1 Tax=Acetobacter pasteurianus RepID=I3W079_ACEPA
IncW-like replication protein {ECO:0000313|EMBL:AFK89006.1}; TaxID=438 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acetobacter.;" source="Acetobacter pasteurianus (Acetobacter turbidans).;"
plasmid replication initiator
SCNpilot_cont_750_bf_scaffold_593_curated_18
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29880..30755
DNA (876bp) protein (292aa)
conjugal transfer protein TrbB n=1 Tax=Verminephrobacter aporrectodeae RepID=UPI0002377329
Type II secretion system protein E {ECO:0000313|EMBL:EPL59875.1}; TaxID=1212549 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri B1SMN1.;"
type II secretion system protein E; K03196 type IV secretion system protein VirB11
SCNpilot_cont_750_bf_scaffold_593_curated_19
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30764..31105
DNA (342bp) protein (114aa)
Conjugal transfer protein TrbC n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I3K2_RHOVT
conjugal transfer protein Trbc; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ADP70349.1}; Flags: Precursor;; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_750_bf_scaffold_593_curated_20
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31102..31455
DNA (354bp) protein (118aa)
hypothetical protein n=2 Tax=Xanthomonas axonopodis RepID=UPI0003179916
conjugal transfer protein TrbD; K03198 type IV secretion system protein VirB3
Conjugal transfer protein TrbD {ECO:0000313|EMBL:ADP70348.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_750_bf_scaffold_593_curated_21
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31459..33918
DNA (2460bp) protein (820aa)
CagE, TrbE, VirB component of type IV transporter system, conserved region n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I8N2_RHOVT
CagE, TrbE, VirB component of type IV transporter system; K03199 type IV secretion system protein VirB4
CagE, TrbE, VirB component of type IV transporter system, conserved region {ECO:0000313|EMBL:ADP72011.1}; Flags: Precursor;; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_750_bf_scaffold_593_curated_22

Not on your lists

33902..34657
DNA (756bp) protein (252aa)
hypothetical protein n=1 Tax=Xanthomonas axonopodis RepID=UPI000374899D
Uncharacterized protein {ECO:0000313|EMBL:AIA15444.1}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
conjugal transfer protein
SCNpilot_cont_750_bf_scaffold_593_curated_23
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34779..36119
DNA (1341bp) protein (447aa)
P-type conjugative transfer protein TrbL n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZH2_RHOVT
P-type conjugative transfer protein TrbL; K07344 type IV secretion system protein TrbL
P-type conjugative transfer protein TrbL {ECO:0000313|EMBL:ADP71007.1}; Flags: Precursor;; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_750_bf_scaffold_593_curated_24
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36131..36823
DNA (693bp) protein (231aa)
Conjugal transfer protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I8M9_RHOVT
conjugal transfer protein
Conjugal transfer protein {ECO:0000313|EMBL:ADP70344.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_750_bf_scaffold_593_curated_25
Aeromonas caviae, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36841..37830
DNA (990bp) protein (330aa)
Putative mating pair formation protein n=2 Tax=Ralstonia solanacearum RepID=V5AS01_RALSL
Conjugal transfer protein TrbG {ECO:0000313|EMBL:KEP91355.1}; TaxID=648 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas caviae (Aeromonas punctata).;"
P-type conjugative transfer protein TrbG; K03204 type IV secretion system protein VirB9
SCNpilot_cont_750_bf_scaffold_593_curated_26
Brevundimonas nasdae, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

37827..38285
DNA (459bp) protein (153aa)
Uncharacterized protein {ECO:0000313|EMBL:KIC55876.1}; TaxID=172043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas nasdae.;"
SCNpilot_cont_750_bf_scaffold_593_curated_27
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38615..39706
DNA (1092bp) protein (364aa)
Conjugation TrbI family protein n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3HZG9_RHOVT
conjugation TrbI family protein; K03195 type IV secretion system protein VirB10
Conjugation TrbI family protein {ECO:0000313|EMBL:ADP71004.1}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_cont_750_bf_scaffold_593_curated_28
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

40402..41319
DNA (918bp) protein (306aa)
Beta-lactamase domain protein n=1 Tax=Sinorhizobium fredii USDA 257 RepID=I3X8T3_RHIFR
beta-lactamase
Beta-lactamase domain protein {ECO:0000313|EMBL:AFL52289.1}; TaxID=1185652 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium fredii USDA 257.;"
SCNpilot_cont_750_bf_scaffold_593_curated_29
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

41933..44224
DNA (2292bp) protein (764aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
Sensory transduction protein kinase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LT60_RHITR
sensory transduction protein kinase
SCNpilot_cont_750_bf_scaffold_593_curated_30
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44221..44865
DNA (645bp) protein (215aa)
chemotaxis protein CheY n=1 Tax=Rhizobium leguminosarum RepID=UPI000365FC28
LuxR family two component transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:ACS59398.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
Displaying items 1-30 of 68 in total

View Taxonomy