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SCNpilot_cont_300_bf_scaffold_789_curated

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_789_curated_1

Not on your lists

comp(171..614)
DNA (444bp) protein (148aa)
CMP deaminase n=1 Tax=Sphingomonas wittichii RepID=UPI000362D122
Marine sediment metagenome DNA, contig: S01H1_S22504 {ECO:0000313|EMBL:GAG24502.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
putative dCMP deaminase family protein
SCNpilot_cont_300_bf_scaffold_789_curated_2
Nitrosopumilus maritimus, Nitrosopumilus, Nitrosopumilales, Thaumarchaeota, Archaea

Not on your lists

comp(607..2610)
DNA (2004bp) protein (668aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0003095DD8
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX13368.1}; TaxID=436308 species="Archaea; Thaumarchaeota; Nitrosopumilales; Nitrosopumilaceae; Nitrosopumilus.;" source="Nitrosopumilus maritimus (strain SCM1).;"
SCNpilot_cont_300_bf_scaffold_789_curated_3
Microbacterium sp. C448, Microbacterium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2612..3556)
DNA (945bp) protein (315aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00036F36D3
Uncharacterized protein {ECO:0000313|EMBL:CDK00541.1}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;"
SCNpilot_cont_300_bf_scaffold_789_curated_4
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3847..4989
DNA (1143bp) protein (381aa)
thymidine phosphorylase; K00756 pyrimidine-nucleoside phosphorylase [EC:2.4.2.2]
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00037A7988
Putative thymidine phosphorylase-like protein {ECO:0000313|EMBL:KIN90505.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
SCNpilot_cont_300_bf_scaffold_789_curated_5
Thauera sp. SWB20, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4982..8623
DNA (3642bp) protein (1214aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI000370C0BF
Kinase domain protein {ECO:0000313|EMBL:KIN90732.1}; TaxID=1572758 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. SWB20.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_6
Thiomonas sp. CB2, Thiomonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8891..9787)
DNA (897bp) protein (299aa)
FRG domain-containing protein n=1 Tax=Gluconacetobacter oboediens RepID=UPI000237DE42
FRG domain protein {ECO:0000313|EMBL:CDW95102.1}; TaxID=554131 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Thiomonas.;" source="Thiomonas sp. CB2.;"
FRG domain-containing protein
SCNpilot_cont_300_bf_scaffold_789_curated_7
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10063..13383
DNA (3321bp) protein (1107aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002E38344
Uncharacterized protein {ECO:0000313|EMBL:CDX40033.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
SCNpilot_cont_300_bf_scaffold_789_curated_8
Bradyrhizobium diazoefficiens, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13380..15113
DNA (1734bp) protein (578aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002EA22CC
Uncharacterized protein {ECO:0000313|EMBL:BAR58806.1}; TaxID=1355477 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium diazoefficiens.;"
NERD domain-containing protein
SCNpilot_cont_300_bf_scaffold_789_curated_9
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15110..18490
DNA (3381bp) protein (1127aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI00032009DC
Uncharacterized protein {ECO:0000313|EMBL:CDX40027.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_10
Mesorhizobium sp. ORS3359, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18487..20385
DNA (1899bp) protein (633aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0003044145
Uncharacterized protein {ECO:0000313|EMBL:CDX40024.1}; TaxID=1505933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3359.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_11
Mesorhizobium ciceri, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(20398..21510)
DNA (1113bp) protein (371aa)
DNA-cytosine methyltransferase; K00558 DNA (cytosine-5-)-methyltransferase [EC:2.1.1.37]
Cytosine-specific methyltransferase {ECO:0000256|RuleBase:RU000417}; EC=2.1.1.37 {ECO:0000256|RuleBase:RU000417};; TaxID=765698 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 /; WSM1271).;"
Cytosine-specific methyltransferase n=1 Tax=Mesorhizobium ciceri bv. biserrulae (strain HAMBI 2942 / LMG 23838 / WSM1271) RepID=E8T9T7_MESCW
SCNpilot_cont_300_bf_scaffold_789_curated_12
unknown

Not on your lists

comp(21619..21774)
DNA (156bp) protein (52aa)
XorII very short patch repair endonuclease n=1 Tax=Sphingomonas wittichii RepID=UPI000368CF2D
SCNpilot_cont_300_bf_scaffold_789_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22115..24019)
DNA (1905bp) protein (635aa)
conjugal transfer protein TraI n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488620
Uncharacterized protein {ECO:0000313|EMBL:ENY82811.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24274..24564)
DNA (291bp) protein (97aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488621
Uncharacterized protein {ECO:0000313|EMBL:ENY82812.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_cont_300_bf_scaffold_789_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24792..25385)
DNA (594bp) protein (198aa)
lytic transglycosylase n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488622
Putative lytic transglycosylase {ECO:0000313|EMBL:ENY82813.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
putative lytic transglycosylase
SCNpilot_cont_300_bf_scaffold_789_curated_16
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25388..25969)
DNA (582bp) protein (194aa)
conjugal transfer protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI0002488623
Conjugal transfer protein TraF {ECO:0000313|EMBL:ENY82814.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
conjugal transfer protein TraF
SCNpilot_cont_300_bf_scaffold_789_curated_17
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25966..26196)
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UWK6_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82815.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_18
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26472..26771)
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7B6
Uncharacterized protein {ECO:0000313|EMBL:EAT08823.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_19
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27030..27248
DNA (219bp) protein (73aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7B7
Uncharacterized protein {ECO:0000313|EMBL:EAT08824.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27277..27969
DNA (693bp) protein (231aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QFB2_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE65085.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_cont_300_bf_scaffold_789_curated_21
Sphingobium sp. HDIP04, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27972..28931
DNA (960bp) protein (320aa)
Uncharacterized protein n=2 Tax=Sphingobium RepID=I5BI24_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB05705.1}; TaxID=428994 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. HDIP04.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_22
Komagataeibacter xylinus, Komagataeibacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28984..29850
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Vibrio owensii RepID=UPI0003652ABF
Uncharacterized protein {ECO:0000313|EMBL:AHI26389.1}; TaxID=1296990 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Komagataeibacter.;" source="Komagataeibacter xylinus E25.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_23
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29963..30937)
DNA (975bp) protein (325aa)
ParB-like protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7B9
ParB-like protein {ECO:0000313|EMBL:ENY82819.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ParB-like protein; K03497 chromosome partitioning protein, ParB family
SCNpilot_cont_300_bf_scaffold_789_curated_24
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31070..31735)
DNA (666bp) protein (222aa)
ParB-like protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UX37_9SPHN
ParB-like protein {ECO:0000313|EMBL:ENY82819.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
ParB-like protein; K03497 chromosome partitioning protein, ParB family
SCNpilot_cont_300_bf_scaffold_789_curated_25
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31820..32242)
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NCR5_9SPHN
Scaffold3, whole genome shotgun sequence {ECO:0000313|EMBL:KIS32905.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_789_curated_26
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32239..33225)
DNA (987bp) protein (329aa)
Antirestriction protein ArdC n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WH81_9SPHN
Antirestriction protein ArdC {ECO:0000313|EMBL:ENY82821.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
antirestriction protein ArdC
SCNpilot_cont_300_bf_scaffold_789_curated_27
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33934..34167
DNA (234bp) protein (78aa)
XRE family transcriptional regulator n=1 Tax=Variovorax sp. WDL1 RepID=M1KKV9_9BURK
XRE family transcriptional regulator {ECO:0000313|EMBL:AGF25456.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
XRE family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_789_curated_28
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34172..34669)
DNA (498bp) protein (166aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI0003802A1C
Uncharacterized protein {ECO:0000313|EMBL:AGF25455.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
SCNpilot_cont_300_bf_scaffold_789_curated_29
unknown

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comp(34704..34886)
DNA (183bp) protein (61aa)
hypothetical protein n=1 Tax=Sphingomonas sp. KC8 RepID=UPI000248A7C4
SCNpilot_cont_300_bf_scaffold_789_curated_30
Variovorax sp. WDL1, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(34897..35763)
DNA (867bp) protein (289aa)
Phytanoyl-CoA dioxygenase n=1 Tax=Variovorax sp. WDL1 RepID=M1KJZ7_9BURK
Phytanoyl-CoA dioxygenase {ECO:0000313|EMBL:AGF25453.1}; TaxID=207745 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. WDL1.;"
Phytanoyl-CoA dioxygenase
Displaying items 1-30 of 38 in total

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