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SCNpilot_cont_300_bf_scaffold_37_curated

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Displaying items 1-30 of 294 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_37_curated_1
Acinetobacter pittii, Acinetobacter, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..4485
DNA (4485bp) protein (1495aa)
hypothetical protein, partial n=1 Tax=Sphingomonas elodea RepID=UPI0002631069
Uncharacterized protein {ECO:0000313|EMBL:EOQ73935.1}; Flags: Fragment;; TaxID=1217689 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex.;" source="Acinetobacter pittii ANC 4052.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_37_curated_2
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5076..5420
DNA (345bp) protein (115aa)
transposase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C0A4
Transposase orfA IS5 family element {ECO:0000313|EMBL:EAT07919.1}; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
IS5 family transposase
SCNpilot_cont_300_bf_scaffold_37_curated_3
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5441..5830
DNA (390bp) protein (130aa)
transposase n=1 Tax=Sphingobium yanoikuyae RepID=UPI000262C0A3
Transposase {ECO:0000313|EMBL:EIZ77260.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
IS4 family transposase
SCNpilot_cont_300_bf_scaffold_37_curated_4
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6168..7304)
DNA (1137bp) protein (379aa)
cell wall shape-determining protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FFA897
Rod shape-determining protein RodA {ECO:0000313|EMBL:AJP71393.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rod shape-determining protein RodA; K05837 rod shape determining protein RodA
SCNpilot_cont_300_bf_scaffold_37_curated_5
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7304..9337)
DNA (2034bp) protein (678aa)
penicillin-binding protein 2 (EC:2.4.1.129); K05515 penicillin-binding protein 2
penicillin-binding protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003138A54
Penicillin-binding protein {ECO:0000313|EMBL:AJP71394.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_37_curated_6
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9337..9843)
DNA (507bp) protein (169aa)
membrane protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0003195E58
Rod shape-determining protein MreD {ECO:0000313|EMBL:AJP71395.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rod shape-determining protein MreD
SCNpilot_cont_300_bf_scaffold_37_curated_7
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9846..10751)
DNA (906bp) protein (302aa)
rod shape-determining protein MreC n=1 Tax=Sphingomonas elodea RepID=UPI0002630B53
Rod shape-determining protein MreC {ECO:0000313|EMBL:AJP71396.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rod shape-determining protein MreC; K03570 rod shape-determining protein MreC
SCNpilot_cont_300_bf_scaffold_37_curated_8
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10767..11807)
DNA (1041bp) protein (347aa)
rod shape-determining protein MreB n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002DC5236
Rod shape-determining protein MreB {ECO:0000313|EMBL:AJP71397.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins
SCNpilot_cont_300_bf_scaffold_37_curated_9
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11960..13762
DNA (1803bp) protein (601aa)
MutL C terminal dimerization domain n=1 Tax=uncultured organism RepID=T1W7J9_9ZZZZ
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
mutL; DNA mismatch repair protein; K03572 DNA mismatch repair protein MutL
SCNpilot_cont_300_bf_scaffold_37_curated_10
Staphylococcus aureus, Staphylococcus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13834..15162)
DNA (1329bp) protein (443aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00037A242F
Strain SA-120 Contig562, whole genome shotgun sequence {ECO:0000313|EMBL:KIU01067.1}; TaxID=46170 species="Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcus.;" source="Staphylococcus aureus subsp. aureus.;"
SCNpilot_cont_300_bf_scaffold_37_curated_11
Collimonas arenae, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15278..15565)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Burkholderia gladioli (strain BSR3) RepID=F2LR29_BURGS
Uncharacterized protein {ECO:0000313|EMBL:AIY41369.1}; TaxID=279058 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas arenae.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_37_curated_12
GWC2_Geobacteraceae_55_20_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15611..16327)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000319EC6B
Allergen V5/Tpx-1 related
Tax=GWC2_Geobacteraceae_55_20_curated
SCNpilot_cont_300_bf_scaffold_37_curated_13
RHI_Sphingopyxis_65_19, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16436..17038)
DNA (603bp) protein (201aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000362A396
SCP-like extracellular
Tax=RIFCSPHIGHO2_12_FULL_Sphingopyxis_65_19_curated
SCNpilot_cont_300_bf_scaffold_37_curated_14
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(17384..18001)
DNA (618bp) protein (206aa)
50S ribosomal protein L9 n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B59801
50S ribosomal protein L9 {ECO:0000256|HAMAP-Rule:MF_00503, ECO:0000313|EMBL:AJP71400.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rplI; ribosomal protein L9; K02939 large subunit ribosomal protein L9
SCNpilot_cont_300_bf_scaffold_37_curated_15
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18016..18240)
DNA (225bp) protein (75aa)
30S ribosomal protein S18 n=1 Tax=Sphingomonas RepID=UPI0002631DAC
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270, ECO:0000313|EMBL:AJP71401.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
rpsR; ribosomal protein S18; K02963 small subunit ribosomal protein S18
SCNpilot_cont_300_bf_scaffold_37_curated_16
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(18254..18643)
DNA (390bp) protein (130aa)
30S ribosomal protein S6 n=1 Tax=Sphingomonas elodea RepID=UPI0002631DAD
30S ribosomal protein S6 {ECO:0000256|HAMAP-Rule:MF_00360, ECO:0000313|EMBL:AJP71402.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
30S ribosomal protein S6; K02990 small subunit ribosomal protein S6
SCNpilot_cont_300_bf_scaffold_37_curated_17
unknown

Not on your lists

18870..20336
DNA (1467bp) protein (489aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_37_curated_18
unknown

Not on your lists

comp(20379..21344)
DNA (966bp) protein (322aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_37_curated_19
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21479..21811)
DNA (333bp) protein (111aa)
Putative integral membrane protein n=1 Tax=Novosphingobium sp. AP12 RepID=J2G200_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:AJP71403.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_37_curated_20
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22034..22969
DNA (936bp) protein (312aa)
Malonyl CoA-acyl carrier protein transacylase {ECO:0000256|PIRNR:PIRNR000446}; EC=2.3.1.39 {ECO:0000256|PIRNR:PIRNR000446};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
ACP S-malonyltransferase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002FD2216
malonyl CoA-acyl carrier protein transacylase
SCNpilot_cont_300_bf_scaffold_37_curated_21
Sphingobium herbicidovorans, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23024..23440
DNA (417bp) protein (139aa)
Fe3+ hydroxamate ABC transporter substrate-binding protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA08E
Fe3+ hydroxamate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KFG89719.1}; TaxID=1219045 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium herbicidovorans (strain ATCC 700291 / DSM 11019 / NBRC; 16415 / MH) (Sphingomonas herbicidovorans).;"
Fe3+-hydroxamate ABC transporter periplasmic protein
SCNpilot_cont_300_bf_scaffold_37_curated_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23463..24200
DNA (738bp) protein (246aa)
3-oxoacyl-ACP synthase n=1 Tax=Sphingomonas elodea RepID=UPI00017092CC
FabG protein {ECO:0000313|EMBL:GAN13172.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
3-oxoacyl-ACP reductase
SCNpilot_cont_300_bf_scaffold_37_curated_23
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24229..24765
DNA (537bp) protein (179aa)
hypothetical protein n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI0002ECA476
Uncharacterized protein {ECO:0000313|EMBL:AJP71406.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
SCNpilot_cont_300_bf_scaffold_37_curated_24
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24867..25115
DNA (249bp) protein (83aa)
acyl carrier protein n=1 Tax=Sphingomonas RepID=UPI0002631DB1
Acyl carrier protein {ECO:0000256|HAMAP-Rule:MF_01217, ECO:0000256|RuleBase:RU003545}; Short=ACP {ECO:0000256|HAMAP-Rule:MF_01217};; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
acpP; acyl carrier protein; K02078 acyl carrier protein
SCNpilot_cont_300_bf_scaffold_37_curated_25
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25283..26542
DNA (1260bp) protein (420aa)
3-oxoacyl-[acyl-carrier-protein] synthase 2 {ECO:0000256|PIRNR:PIRNR000447}; EC=2.3.1.179 {ECO:0000256|PIRNR:PIRNR000447, ECO:0000313|EMBL:AJP71408.1};; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
fabF; 3-oxoacyl-ACP synthase; K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179]
3-oxoacyl-ACP synthase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DB2
SCNpilot_cont_300_bf_scaffold_37_curated_26
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26616..27563
DNA (948bp) protein (316aa)
aminodeoxychorismate lyase n=1 Tax=Sphingomonas melonis RepID=UPI00035F1CBB
Aminodeoxychorismate lyase {ECO:0000313|EMBL:AJP71409.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
aminodeoxychorismate lyase
SCNpilot_cont_300_bf_scaffold_37_curated_27
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27646..29256
DNA (1611bp) protein (537aa)
peptidase S10 n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI00030E0CAA
Peptidase S10 family protein {ECO:0000313|EMBL:GAO40501.1}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
peptidase S10 serine carboxypeptidase
SCNpilot_cont_300_bf_scaffold_37_curated_28
Novosphingobium tardaugens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29265..29732)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Novosphingobium tardaugens NBRC 16725 RepID=U2ZZS9_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:GAD48033.1}; TaxID=1219035 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium tardaugens NBRC 16725.;"
hypothetical protein; K06886 hemoglobin
SCNpilot_cont_300_bf_scaffold_37_curated_29
Sphingomonas parapaucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29899..30507)
DNA (609bp) protein (203aa)
2-keto-3-deoxy-phosphogluconate aldolase (EC:4.1.2.14); K01625 2-dehydro-3-deoxyphosphogluconate aldolase / 4-hydroxy-2-oxoglutarate aldolase [EC:4.1.2.14 4.1.3.16]
ketohydroxyglutarate aldolase n=1 Tax=Sphingomonas elodea RepID=UPI0002631DBA
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:GAL99506.1}; TaxID=1219049 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas parapaucimobilis NBRC 15100.;"
SCNpilot_cont_300_bf_scaffold_37_curated_30
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30504..31472)
DNA (969bp) protein (323aa)
glucokinase (EC:2.7.1.2); K00845 glucokinase [EC:2.7.1.2]
glucokinase n=1 Tax=Sphingomonas sp. ATCC 31555 RepID=UPI000312FC88
Glucokinase {ECO:0000313|EMBL:AJP71411.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Displaying items 1-30 of 294 in total

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