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SCNpilot_expt_500_bf_scaffold_6929_curated

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Displaying 10 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_6929_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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28..1164
DNA (1137bp) protein (379aa)
3-oxoacyl-ACP synthase; K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
3-oxoacyl-(Acyl carrier protein) synthase III n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVL4_9SPHN
3-oxoacyl-(Acyl carrier protein) synthase III {ECO:0000313|EMBL:ENY82319.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_6929_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1210..2292)
DNA (1083bp) protein (361aa)
Sodium/calcium exchanger membrane protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WF17_9SPHN
Sodium/calcium exchanger membrane protein {ECO:0000313|EMBL:ENY82318.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
chaA; Calcium/proton antiporter; K07300 Ca2+:H+ antiporter
SCNpilot_expt_500_bf_scaffold_6929_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2341..3105)
DNA (765bp) protein (255aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
imidazole glycerol phosphate synthase subunit HisF; K02500 cyclase [EC:4.1.3.-]
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W456_9SPHN
SCNpilot_expt_500_bf_scaffold_6929_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3251..3985)
DNA (735bp) protein (245aa)
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658}; EC=5.3.1.16 {ECO:0000256|HAMAP-Rule:MF_01014, ECO:0000256|RuleBase:RU003658};; Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000256|HAMAP-Rule:MF_01014}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; K01814 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase [EC:5.3.1.16]
1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFV9_9SPHN
SCNpilot_expt_500_bf_scaffold_6929_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3973..4470)
DNA (498bp) protein (166aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-Rule:MF_00278}; IGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; ImGP synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hisH; imidazole glycerol phosphate synthase subunit HisH; K02501 glutamine amidotransferase [EC:2.4.2.-]
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV35_9SPHN
SCNpilot_expt_500_bf_scaffold_6929_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4563..5150)
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hisB; imidazoleglycerol-phosphate dehydratase; K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19]
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVL0_9SPHN
SCNpilot_expt_500_bf_scaffold_6929_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5248..5730
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WF14_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82313.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein; K09985 hypothetical protein
SCNpilot_expt_500_bf_scaffold_6929_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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5732..6043
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W451_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82312.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
SCNpilot_expt_500_bf_scaffold_6929_curated_9
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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6040..7455
DNA (1416bp) protein (472aa)
Fumarate hydratase class II {ECO:0000256|HAMAP-Rule:MF_00743}; Short=Fumarase C {ECO:0000256|HAMAP-Rule:MF_00743};; EC=4.2.1.2 {ECO:0000256|HAMAP-Rule:MF_00743};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
fumC; fumarate hydratase (EC:4.2.1.2)
Fumarate hydratase class II n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFV4_9SPHN
SCNpilot_expt_500_bf_scaffold_6929_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7472..7795
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UV30_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:ENY82310.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
Displaying 10 items

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