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SCNpilot_expt_500_bf_scaffold_1505_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_500_bf_scaffold_1505_curated_1
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..715)
DNA (714bp) protein (238aa)
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; EC=2.3.1.117 {ECO:0000256|HAMAP-Rule:MF_00811};; Tetrahydrodipicolinate N-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00811}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
dapD; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; K00674 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase [EC:2.3.1.117]
2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFE0_9SPHN
SCNpilot_expt_500_bf_scaffold_1505_curated_2
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(730..1473)
DNA (744bp) protein (248aa)
Pyrimidine 5-nucleotidase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVZ4_9SPHN
Pyrimidine 5-nucleotidase {ECO:0000313|EMBL:ENY82454.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
pyrimidine 5-nucleotidase; K07025 putative hydrolase of the HAD superfamily
SCNpilot_expt_500_bf_scaffold_1505_curated_3
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1520..2821
DNA (1302bp) protein (434aa)
Amidohydrolase n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVF8_9SPHN
Amidohydrolase {ECO:0000313|EMBL:ENY82455.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
amidohydrolase
SCNpilot_expt_500_bf_scaffold_1505_curated_4
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2911..3408)
DNA (498bp) protein (166aa)
Uracil-DNA glycosylase superfamily protein n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG80_9SPHN
Uracil-DNA glycosylase superfamily protein {ECO:0000313|EMBL:ENY82456.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
uracil-DNA glycosylase superfamily protein
SCNpilot_expt_500_bf_scaffold_1505_curated_5
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3699..4070
DNA (372bp) protein (124aa)
30S ribosomal protein S12 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4J0_9SPHN
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
rpsL; 30S ribosomal protein S12; K02950 small subunit ribosomal protein S12
SCNpilot_expt_500_bf_scaffold_1505_curated_6
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4144..4614
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=Sphingopyxis RepID=RS7_SPHAL rbh
30S ribosomal protein S7; K02992 small subunit ribosomal protein S7
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1505_curated_7
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4711..6804
DNA (2094bp) protein (698aa)
Elongation factor G n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVZ9_9SPHN
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
fusA; elongation factor G; K02355 elongation factor G
SCNpilot_expt_500_bf_scaffold_1505_curated_8
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6958..8148
DNA (1191bp) protein (397aa)
Elongation factor Tu n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVG3_9SPHN
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
tuf; elongation factor Tu; K02358 elongation factor Tu
SCNpilot_expt_500_bf_scaffold_1505_curated_9
unknown

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comp(8141..8251)
DNA (111bp) protein (37aa)

This feature has no annotations

SCNpilot_expt_500_bf_scaffold_1505_curated_10
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8296..8607
DNA (312bp) protein (104aa)
30S ribosomal protein S10 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WG84_9SPHN
rpsJ; 30S ribosomal protein S10; K02946 small subunit ribosomal protein S10
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
SCNpilot_expt_500_bf_scaffold_1505_curated_11
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


8911..9669
DNA (759bp) protein (253aa)
50S ribosomal protein L3 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9W4J7_9SPHN
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
rplC; 50S ribosomal protein L3; K02906 large subunit ribosomal protein L3
SCNpilot_expt_500_bf_scaffold_1505_curated_12
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9672..10298
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9WFF0_9SPHN
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4
SCNpilot_expt_500_bf_scaffold_1505_curated_13
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10291..10599
DNA (309bp) protein (103aa)
50S ribosomal protein L23 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UW05_9SPHN
50S ribosomal protein L23 {ECO:0000256|HAMAP-Rule:MF_01369, ECO:0000256|RuleBase:RU003935}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
rplW; 50S ribosomal protein L23; K02892 large subunit ribosomal protein L23
SCNpilot_expt_500_bf_scaffold_1505_curated_14
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


10622..11458
DNA (837bp) protein (279aa)
50S ribosomal protein L2 n=1 Tax=Sphingopyxis sp. MC1 RepID=N9UVG7_9SPHN
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
rplB; 50S ribosomal protein L2; K02886 large subunit ribosomal protein L2
SCNpilot_expt_500_bf_scaffold_1505_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11462..11701
DNA (240bp) protein (80aa)
30S ribosomal protein S19 n=4 Tax=Sphingopyxis RepID=I0IW71_9SPHN
30S ribosomal protein S19 {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
rpsS; 30S ribosomal protein S19; K02965 small subunit ribosomal protein S19
Displaying 15 items

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