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SCNpilot_cont_300_bf_scaffold_377_curated

Search features with annotation key words

Displaying items 1-30 of 110 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_377_curated_1
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

2..301
DNA (300bp) protein (100aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037A0789
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:AEI51226.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_377_curated_2
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

323..1342
DNA (1020bp) protein (340aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000375021E
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:AEI51227.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
SCNpilot_cont_300_bf_scaffold_377_curated_3
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

1501..5100
DNA (3600bp) protein (1200aa)
collagen-binding protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003628A81
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADB40738.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_4
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

5119..6906
DNA (1788bp) protein (596aa)
starch-binding protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037EA1F4
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ADB40739.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_5
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

6989..7828
DNA (840bp) protein (280aa)
endonuclease/exonuclease/phosphatase n=1 Tax=Spirosoma panaciterrae RepID=UPI000368BD0B
endonuclease/exonuclease/phosphatase; K06896
Endonuclease/exonuclease/phosphatase {ECO:0000313|EMBL:ADB40740.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_6
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(7918..9183)
DNA (1266bp) protein (422aa)
N-acylglucosamine 2-epimerase n=1 Tax=Spirosoma panaciterrae RepID=UPI000361D432
N-acylglucosamine 2-epimerase
N-acylglucosamine 2-epimerase {ECO:0000313|EMBL:ADB42339.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_7
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(9176..10186)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037050C5
PfkB domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:ADB42338.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_8
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10500..11579
DNA (1080bp) protein (360aa)
O-methyltransferase n=1 Tax=Spirosoma panaciterrae RepID=UPI000368DD0A
Methyltransferase {ECO:0000313|EMBL:AKD57081.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
O-methyltransferase family 2
SCNpilot_cont_300_bf_scaffold_377_curated_9
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

11643..12923
DNA (1281bp) protein (427aa)
MFS transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI00037C946B
MFS transporter {ECO:0000313|EMBL:AKD54196.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
major facilitator superfamily protein
SCNpilot_cont_300_bf_scaffold_377_curated_10
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

13108..13569
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZU53_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB76619.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_300_bf_scaffold_377_curated_11
unknown

Not on your lists

comp(13504..13803)
DNA (300bp) protein (100aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_377_curated_12
Leptospira weilii, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

13970..14563
DNA (594bp) protein (198aa)
dihydrofolate reductase n=1 Tax=Segetibacter koreensis RepID=UPI000369E229
Riboflavin biosynthesis protein RibD C-terminal domain protein {ECO:0000313|EMBL:EMF81930.1}; TaxID=1088540 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira weilii serovar Topaz str. LT2116.;"
folA; dihydrofolate reductase-like protein
SCNpilot_cont_300_bf_scaffold_377_curated_13
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(14594..15187)
DNA (594bp) protein (198aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003664BEA
hypothetical protein; K09164 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB42327.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_14
Mariniradius saccharolyticus, Mariniradius, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(15190..16683)
DNA (1494bp) protein (498aa)
Beta-Ala-His dipeptidase (EC:3.4.13.20)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037EFE43
Acetylornithine deacetylase {ECO:0000313|EMBL:EMS31431.1}; TaxID=1239962 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Mariniradius.;" source="Mariniradius saccharolyticus AK6.;"
SCNpilot_cont_300_bf_scaffold_377_curated_15
Flavobacterium sp. F52, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

16922..18577
DNA (1656bp) protein (552aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036C8CA1
Uncharacterized protein {ECO:0000313|EMBL:EJG03208.1}; TaxID=1202532 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium sp. F52.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_377_curated_16
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(18623..19174)
DNA (552bp) protein (184aa)
fasciclin n=1 Tax=Spirosoma panaciterrae RepID=UPI00037D81F6
beta-Ig-H3/fasciclin
Beta-Ig-H3/fasciclin {ECO:0000313|EMBL:ADB40232.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_17
unknown

Not on your lists

19680..20021
DNA (342bp) protein (114aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036ED783
SCNpilot_cont_300_bf_scaffold_377_curated_18
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20031..20684
DNA (654bp) protein (218aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037948C5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCH03205.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
SCNpilot_cont_300_bf_scaffold_377_curated_19
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20688..21527
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036D0B32
Histidine kinase {ECO:0000313|EMBL:AKD57094.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
putative signal transduction histidine kinase
SCNpilot_cont_300_bf_scaffold_377_curated_20
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

21580..22239
DNA (660bp) protein (220aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037A81B6
Ligand-binding protein SH3 {ECO:0000313|EMBL:AKD57093.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
two component LuxR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_377_curated_21
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22315..23340
DNA (1026bp) protein (342aa)
L-Ala-DL-Glu epimerase n=1 Tax=Spirosoma panaciterrae RepID=UPI000370FB08
muconate lactonizing mandelate racemase protein
Mandelate racemase/muconate lactonizing protein {ECO:0000313|EMBL:ADB42308.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_22
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

23351..24427
DNA (1077bp) protein (359aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00037EBAF6
class I and II aminotransferase
Aminotransferase class I and II {ECO:0000313|EMBL:ADB42309.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_23
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(24494..25327)
DNA (834bp) protein (278aa)
xylose isomerase n=1 Tax=Spirosoma panaciterrae RepID=UPI0003677E6F
Sugar phosphate isomerase {ECO:0000313|EMBL:AKD57089.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
xylose isomerase
SCNpilot_cont_300_bf_scaffold_377_curated_24
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(25355..26269)
DNA (915bp) protein (305aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI0003719234
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB42311.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_25
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26472..27728
DNA (1257bp) protein (419aa)
MFS transporter n=1 Tax=Spirosoma panaciterrae RepID=UPI00037A2E63
major facilitator superfamily protein
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ADB40364.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_26
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

27998..29494
DNA (1497bp) protein (499aa)
L-arabinose isomerase {ECO:0000256|SAAS:SAAS00093763}; EC=5.3.1.4 {ECO:0000256|SAAS:SAAS00093763};; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
arabinose isomerase n=1 Tax=Spirosoma panaciterrae RepID=UPI00036A0289
L-fucose isomerase-like protein
SCNpilot_cont_300_bf_scaffold_377_curated_27
unknown

Not on your lists

29515..29637
DNA (123bp) protein (41aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_377_curated_28
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

29655..32849
DNA (3195bp) protein (1065aa)
TonB-dependent receptor n=1 Tax=Spirosoma panaciterrae RepID=UPI0003745C7E
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ADB40362.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_29
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

32974..34410
DNA (1437bp) protein (479aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI00036ED82D
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ADB40361.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
SCNpilot_cont_300_bf_scaffold_377_curated_30
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

34498..37038
DNA (2541bp) protein (847aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000365D879
Uncharacterized protein {ECO:0000313|EMBL:ADB40360.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
hypothetical protein
Displaying items 1-30 of 110 in total

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