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SCNpilot_cont_300_bf_scaffold_126_curated

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Displaying items 1-30 of 301 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_126_curated_1
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(253..795)
DNA (543bp) protein (181aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2JMK9_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL69095.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_126_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

914..1894
DNA (981bp) protein (327aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V078_VARPE
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU34392.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_126_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1908..2081)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2SU33_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL69097.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_126_curated_4
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2208..3014
DNA (807bp) protein (269aa)
Putative phosphohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2K7A4_9BURK
Putative phosphohydrolase {ECO:0000313|EMBL:EJL69098.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
metallophosphoesterase
SCNpilot_cont_300_bf_scaffold_126_curated_5
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3122..4618
DNA (1497bp) protein (499aa)
amidase (EC:6.3.5.-); K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit n=1 Tax=Variovorax sp. CF313 RepID=J3CCX7_9BURK
Amidase, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit {ECO:0000313|EMBL:EJL69099.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
SCNpilot_cont_300_bf_scaffold_126_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4631..5248)
DNA (618bp) protein (206aa)
Regulatory protein TetR n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V075_VARPE
Variovorax paradoxus strain MEDvA23 contig_74, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ24254.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
TetR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_126_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5335..6069)
DNA (735bp) protein (245aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2JML4_9BURK
Variovorax paradoxus strain MEDvA23 contig_74, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ24253.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_126_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6332..7666
DNA (1335bp) protein (445aa)
Rieske (2Fe-2S) iron-sulfur domain n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V073_VARPE
Variovorax paradoxus strain MEDvA23 contig_74, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ24252.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
rieske (2fe-2S) iron-sulfur domain
SCNpilot_cont_300_bf_scaffold_126_curated_9
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7677..9125
DNA (1449bp) protein (483aa)
Glutamine synthetase n=1 Tax=Variovorax sp. CF313 RepID=J2SU37_9BURK
Glutamine synthetase {ECO:0000313|EMBL:EJL69102.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative glutamate--ammonia ligase
SCNpilot_cont_300_bf_scaffold_126_curated_10
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9145..9468
DNA (324bp) protein (108aa)
ferredoxin n=1 Tax=Variovorax paradoxus RepID=UPI00035E9D74
Ferredoxin {ECO:0000313|EMBL:EJL69103.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative ferredoxin
SCNpilot_cont_300_bf_scaffold_126_curated_11
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9564..10757
DNA (1194bp) protein (398aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI0003745999
putative high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein
Putative high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein {ECO:0000313|EMBL:AGU47301.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_126_curated_12
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10825..11685
DNA (861bp) protein (287aa)
Branched-chain amino acid ABC-type transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J2JML7_9BURK
Branched-chain amino acid ABC-type transport system, permease component {ECO:0000313|EMBL:EJL69105.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative high-affinity branched-chain amino acid ABC transporter, permease protein
SCNpilot_cont_300_bf_scaffold_126_curated_13
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11682..12644
DNA (963bp) protein (321aa)
Inner-membrane translocator n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V068_VARPE
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADU34382.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_126_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12641..13411
DNA (771bp) protein (257aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J2SU40_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL69107.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative high-affinity branched-chain amino acid ABC transporter, ATP-binding protein
SCNpilot_cont_300_bf_scaffold_126_curated_15
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13404..14108
DNA (705bp) protein (235aa)
ABC-type branched-chain amino acid transport system, ATPase component n=1 Tax=Variovorax sp. CF313 RepID=J2K7B3_9BURK
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJL69108.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
SCNpilot_cont_300_bf_scaffold_126_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14214..15371)
DNA (1158bp) protein (386aa)
ABC transporter substrate-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00036F679E
ABC-type branched-chain amino acid transport system, periplasmic component {ECO:0000313|EMBL:EJL69517.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative extracellular ligand-binding receptor
SCNpilot_cont_300_bf_scaffold_126_curated_17
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15475..16827)
DNA (1353bp) protein (451aa)
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG22111.1}; EC=1.11.1.5 {ECO:0000313|EMBL:AJG22111.1};; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000382DF50
di-heme cytochrome c peroxidase
SCNpilot_cont_300_bf_scaffold_126_curated_18
Burkholderiaceae bacterium 16, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16824..18392)
DNA (1569bp) protein (523aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036F00C3
Serine/threonine protein phosphatase {ECO:0000313|EMBL:KJK20531.1}; TaxID=1619952 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae.;" source="Burkholderiaceae bacterium 16.;"
Ser/Thr protein phosphatase
SCNpilot_cont_300_bf_scaffold_126_curated_19
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18488..20071)
DNA (1584bp) protein (528aa)
phospholipase n=1 Tax=Variovorax paradoxus RepID=UPI00036B9131
Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase {ECO:0000313|EMBL:EJL69518.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
phospholipase d/transphosphatidylase
SCNpilot_cont_300_bf_scaffold_126_curated_20
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20157..21386
DNA (1230bp) protein (410aa)
Putative membrane protein required for spore maturation n=1 Tax=Variovorax sp. CF313 RepID=J3CDL8_9BURK
Putative membrane protein required for spore maturation {ECO:0000313|EMBL:EJL69519.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
nucleoside recognition domain-containing protein
SCNpilot_cont_300_bf_scaffold_126_curated_21
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21368..23359)
DNA (1992bp) protein (664aa)
Alkyl sulfatase-like hydrolase n=1 Tax=Variovorax sp. CF313 RepID=J2JNZ0_9BURK
Alkyl sulfatase-like hydrolase {ECO:0000313|EMBL:EJL69520.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
steroL-binding domain-containing protein
SCNpilot_cont_300_bf_scaffold_126_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23433..24362
DNA (930bp) protein (310aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J3CDZ7_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL69521.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_126_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24473..24916
DNA (444bp) protein (148aa)
Conserved protein of DIM6/NTAB family n=1 Tax=Variovorax sp. CF313 RepID=J2SVE1_9BURK
Conserved protein of DIM6/NTAB family {ECO:0000313|EMBL:EJL69522.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
flavin reductase-like domain-containing protein
SCNpilot_cont_300_bf_scaffold_126_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24913..25413
DNA (501bp) protein (167aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Variovorax sp. CF313 RepID=J2K8J4_9BURK
Putative periplasmic or secreted lipoprotein {ECO:0000313|EMBL:EJL69523.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative periplasmic phospholipid-binding protein
SCNpilot_cont_300_bf_scaffold_126_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25505..26413
DNA (909bp) protein (303aa)
DMT(Drug/metabolite transporter) superfamily permease n=1 Tax=Variovorax sp. CF313 RepID=J3CDM1_9BURK
DMT(Drug/metabolite transporter) superfamily permease {ECO:0000313|EMBL:EJL69524.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_126_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26410..27363
DNA (954bp) protein (318aa)
Glutaminase {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476}; EC=3.5.1.2 {ECO:0000256|HAMAP-Rule:MF_00313, ECO:0000256|SAAS:SAAS00041476};; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
glutaminase, core (EC:3.5.1.2); K01425 glutaminase [EC:3.5.1.2]
Glutaminase n=1 Tax=Variovorax sp. CF313 RepID=J2JNZ5_9BURK
SCNpilot_cont_300_bf_scaffold_126_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27377..28369)
DNA (993bp) protein (331aa)
Nucleoside-diphosphate-sugar epimerase n=1 Tax=Variovorax sp. CF313 RepID=J3CDZ9_9BURK
Nucleoside-diphosphate-sugar epimerase {ECO:0000313|EMBL:EJL69526.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
NADH(P)-binding domain-containing protein
SCNpilot_cont_300_bf_scaffold_126_curated_28
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28465..29412
DNA (948bp) protein (316aa)
Transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2SVE4_9BURK
Transcriptional regulator {ECO:0000313|EMBL:EJL69527.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_126_curated_29
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29409..29903
DNA (495bp) protein (165aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI000372C2EB
Uncharacterized protein {ECO:0000313|EMBL:EJL69528.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_126_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30282..31475
DNA (1194bp) protein (398aa)
Putative high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein n=1 Tax=Variovorax paradoxus B4 RepID=T1X4C3_VARPD
putative high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein
Putative high-affinity branched-chain amino acid ABC transporter, branched-chain amino acid-binding protein {ECO:0000313|EMBL:AGU47286.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
Displaying items 1-30 of 301 in total

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