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SCNpilot_cont_300_bf_scaffold_415_curated

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_415_curated_1
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..393
DNA (393bp) protein (131aa)
Cobyrinic acid ac-diamide synthase n=8 Tax=Bacteria RepID=A9BTU4_DELAS
ATPase {ECO:0000313|EMBL:KIL06303.1}; TaxID=316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (Pseudomonas perfectomarina).;"
cobyrinic acid ac-diamide synthase; K03496 chromosome partitioning protein
SCNpilot_cont_300_bf_scaffold_415_curated_2
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

390..662
DNA (273bp) protein (91aa)
Regulator of plasmid copy number n=2 Tax=Burkholderiaceae RepID=Q1LNY5_RALME
parG; regulator of plasmid copy number
Uncharacterized protein {ECO:0000313|EMBL:ERJ35803.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
SCNpilot_cont_300_bf_scaffold_415_curated_3
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

659..1204
DNA (546bp) protein (182aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C054_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL21970.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_415_curated_4
Bordetella petrii, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1201..1776
DNA (576bp) protein (192aa)
Conjugal transfer protein TraF n=1 Tax=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) RepID=A9IL24_BORPD
traF1; conjugal transfer protein TraF
Conjugal transfer protein TraF {ECO:0000313|EMBL:CAP42530.1}; TaxID=340100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448).;"
SCNpilot_cont_300_bf_scaffold_415_curated_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2225..4210
DNA (1986bp) protein (662aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X408_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD44930.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_415_curated_6
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4196..5131)
DNA (936bp) protein (312aa)
Protein FdhD homolog n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LP42_9BURK
Protein FdhD homolog {ECO:0000256|HAMAP-Rule:MF_00187, ECO:0000256|SAAS:SAAS00093832}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
fdhD; formate dehydrogenase family accessory protein FdhD; K02379 FdhD protein
SCNpilot_cont_300_bf_scaffold_415_curated_7
Burkholderia sp. CCGE1001, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5128..5373)
DNA (246bp) protein (82aa)
formate dehydrogenase subunit alpha n=1 Tax=Ideonella sp. B508-1 RepID=UPI00034BDDA4
formate dehydrogenase subunit alpha
Formate dehydrogenase, alpha subunit {ECO:0000313|EMBL:ADX56068.1}; TaxID=640510 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. CCGE1001.;"
SCNpilot_cont_300_bf_scaffold_415_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5456..7732)
DNA (2277bp) protein (759aa)
fdh; formate dehydrogenase (EC:1.2.1.2)
Oxidoreductase alpha (Molybdopterin) subunit n=2 Tax=Burkholderia multivorans (strain ATCC 17616 / 249) RepID=A9ATN1_BURM1
Oxidoreductase alpha subunit {ECO:0000313|EMBL:GAO27486.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_cont_300_bf_scaffold_415_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8450..9751)
DNA (1302bp) protein (434aa)
glycolate oxidase n=1 Tax=Variovorax paradoxus RepID=UPI00035CEF8A
Glycolate oxidase iron-sulfur subunit {ECO:0000256|PIRNR:PIRNR000139}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
glcF; glycolate oxidase iron-sulfur subunit; K11473 glycolate oxidase iron-sulfur subunit
SCNpilot_cont_300_bf_scaffold_415_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9753..10868)
DNA (1116bp) protein (372aa)
FAD-binding protein n=1 Tax=Variovorax paradoxus RepID=UPI00037FE9CD
FAD linked oxidase domain-containing protein {ECO:0000313|EMBL:GAO27483.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
fad linked oxidase domain-containing protein; K11472 glycolate oxidase FAD binding subunit
SCNpilot_cont_300_bf_scaffold_415_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10846..12348)
DNA (1503bp) protein (501aa)
FAD linked oxidase; K00104 glycolate oxidase [EC:1.1.3.15]
FAD linked oxidase domain protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CX81_VARPS
Glycolate oxidase {ECO:0000313|EMBL:GAO27482.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_cont_300_bf_scaffold_415_curated_12
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12443..13264)
DNA (822bp) protein (274aa)
Fatty acid hydroxylase n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WLW8_VEREI
Fatty acid hydroxylase {ECO:0000313|EMBL:GAO27481.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
fatty acid hydroxylase
SCNpilot_cont_300_bf_scaffold_415_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13348..14616)
DNA (1269bp) protein (423aa)
Iron-containing alcohol dehydrogenase n=1 Tax=Pseudomonas stutzeri DSM 10701 RepID=I7ACM4_PSEST
Iron-containing alcohol dehydrogenase {ECO:0000313|EMBL:GAO27480.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
iron-containing alcohol dehydrogenase
SCNpilot_cont_300_bf_scaffold_415_curated_14
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14606..15322)
DNA (717bp) protein (239aa)
Hydrolase n=1 Tax=Cupriavidus sp. HPC(L) RepID=V2GC39_9BURK
Hydrolase {ECO:0000313|EMBL:GAO27479.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_415_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15930..16127
DNA (198bp) protein (66aa)
Transcriptional regulator, GntR family n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WLX8_VEREI
GntR family transcriptional regulator {ECO:0000313|EMBL:GAO27478.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
GntR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_415_curated_16
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16173..17489)
DNA (1317bp) protein (439aa)
Putative transporter, Major facilitator superfamily (MFS_1) n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3RC23_CUPTR
major facilitator family transporter; K08369 MFS transporter, putative metabolite:H+ symporter
Putative transporter, Major facilitator superfamily (MFS_1) {ECO:0000313|EMBL:CAQ72448.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_cont_300_bf_scaffold_415_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18042..19016)
DNA (975bp) protein (325aa)
Transcriptional regulator, LysR family n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122U8_POLSJ
LysR family transcriptional regulator {ECO:0000313|EMBL:GAO27471.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_415_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19158..20948
DNA (1791bp) protein (597aa)
glyoxylate carboligase; K01608 tartronate-semialdehyde synthase [EC:4.1.1.47]
Glyoxylate carboligase {ECO:0000313|EMBL:GAO27470.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Glyoxylate carboligase id=1268761 bin=GWE1_Burkholderiales_65_30 species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
SCNpilot_cont_300_bf_scaffold_415_curated_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21034..21813
DNA (780bp) protein (260aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
Hydroxypyruvate isomerase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122U6_POLSJ
SCNpilot_cont_300_bf_scaffold_415_curated_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21844..22752
DNA (909bp) protein (303aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60); K00042 2-hydroxy-3-oxopropionate reductase [EC:1.1.1.60]
2-hydroxy-3-oxopropionate reductase n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q122U5_POLSJ
2-hydroxy-3-oxopropionate reductase {ECO:0000313|EMBL:GAO27468.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_cont_300_bf_scaffold_415_curated_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22749..24074
DNA (1326bp) protein (442aa)
hydroxypyruvate reductase (EC:1.1.1.81)
Hydroxypyruvate reductase n=1 Tax=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) RepID=B1Y407_LEPCP
Hydroxypyruvate reductase {ECO:0000313|EMBL:GAO27467.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_cont_300_bf_scaffold_415_curated_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24094..25527
DNA (1434bp) protein (478aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
pykA2; pyruvate kinase (EC:2.7.1.40); K00873 pyruvate kinase [EC:2.7.1.40]
Pyruvate kinase n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LN74_RALME
SCNpilot_cont_300_bf_scaffold_415_curated_23
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25864..26778
DNA (915bp) protein (305aa)
Transcriptional regulator, LysR family n=2 Tax=Proteobacteria RepID=B2UA73_RALPJ
D-alanyl-D-alanine endopeptidase {ECO:0000313|EMBL:AIJ47396.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
LysR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_415_curated_24
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26803..27030
DNA (228bp) protein (76aa)
hypothetical protein id=12551702 bin=BDI species=Pandoraea sp. RB-44 genus=Pandoraea taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EPD42112.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_415_curated_25
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27248..29257
DNA (2010bp) protein (670aa)
Conjugal transfer coupling protein TraG n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2ELN6_9BURK
Conjugal transfer protein TraG {ECO:0000313|EMBL:AIJ47713.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
conjugal transfer coupling protein TraG; K03205 type IV secretion system protein VirD4
SCNpilot_cont_300_bf_scaffold_415_curated_26
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29254..29718
DNA (465bp) protein (155aa)
CopG domain protein DNA-binding domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIJ4_ACIET
copg domain-containing protein DNA-binding domain-containing protein
CopG domain protein DNA-binding domain protein {ECO:0000313|EMBL:ACM34932.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_cont_300_bf_scaffold_415_curated_27
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29715..30752
DNA (1038bp) protein (346aa)
p-type conjugative transfer atpase trbb n=1 Tax=Cupriavidus sp. HMR-1 RepID=L2EML9_9BURK
Conjugal transfer protein TrbB {ECO:0000313|EMBL:AIJ47392.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
p-type conjugative transfer atpase trbb; K03196 type IV secretion system protein VirB11
SCNpilot_cont_300_bf_scaffold_415_curated_28
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30749..31126
DNA (378bp) protein (126aa)
Conjugal transfer protein TrbC n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BTS2_DELAS
conjugal transfer protein TrbC; K03197 type IV secretion system protein VirB2
Conjugal transfer protein TrbC {ECO:0000313|EMBL:ABM43051.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
SCNpilot_cont_300_bf_scaffold_415_curated_29
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31123..31395
DNA (273bp) protein (91aa)
Uncharacterized protein n=8 Tax=Proteobacteria RepID=N2D984_PSEAI
putative conjugal transfer TrbD transmembrane protein
Putative conjugal transfer TrbD transmembrane protein {ECO:0000313|EMBL:ABX33082.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
SCNpilot_cont_300_bf_scaffold_415_curated_30
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31408..33882
DNA (2475bp) protein (825aa)
AAA ATPase n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BPW2_DELAS
conjugal transfer ATPase TrbE; K03199 type IV secretion system protein VirB4
AAA ATPase {ECO:0000313|EMBL:ABX33081.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
Displaying items 1-30 of 43 in total

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