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SCNpilot_cont_300_bf_scaffold_189_curated

Search features with annotation key words

Displaying items 1-30 of 240 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_189_curated_1
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..268
DNA (267bp) protein (89aa)
FAD linked oxidase domain protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6S2_VARPE
fad linked oxidase domain-containing protein
Variovorax paradoxus strain MEDvA23 contig_20, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ33716.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_189_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(563..1258)
DNA (696bp) protein (232aa)
Putative ABC transporter, periplasmic molybdate binding protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1M0_VARPE
ABC transporter periplasmic molybdate binding protein; K02020 molybdate transport system substrate-binding protein
Putative ABC transporter, periplasmic molybdate binding protein {ECO:0000313|EMBL:ADU36776.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_189_curated_3
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1278..2171)
DNA (894bp) protein (298aa)
6-phosphogluconate dehydrogenase n=1 Tax=Variovorax paradoxus RepID=UPI00037CCB3C
putative NAD binding domain-containing phosphogluconate dehydrogenase
Putative NAD binding domain-containing phosphogluconate dehydrogenase {ECO:0000313|EMBL:AGU52714.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_189_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2197..3198)
DNA (1002bp) protein (334aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CZT0_VARPS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACS22330.1}; Flags: Precursor;; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_189_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3210..4190)
DNA (981bp) protein (327aa)
Putative Bug-like extra-cytoplasmic solute receptor, TTT-family n=1 Tax=Variovorax paradoxus B4 RepID=T1XIJ9_VARPD
putative Bug-like extra-cytoplasmic solute receptor, TTT-family
Putative Bug-like extra-cytoplasmic solute receptor, TTT-family {ECO:0000313|EMBL:AGU52712.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_189_curated_6
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4226..5530)
DNA (1305bp) protein (435aa)
extradiol ring-cleavage dioxygenase class iii protein subunit b; K04099 protocatechuate 4,5-dioxygenase [EC:1.13.11.8]
Extradiol ring-cleavage dioxygenase class III protein subunit B n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1M2_VARPE
Extradiol ring-cleavage dioxygenase class III protein subunit B {ECO:0000313|EMBL:ADU36778.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_189_curated_7
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5546..6244)
DNA (699bp) protein (233aa)
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase; K10218 4-hydroxy-4-methyl-2-oxoglutarate aldolase [EC:4.1.3.17]
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V1M3_VARPE
4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase {ECO:0000313|EMBL:ADU36779.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_189_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6247..7275)
DNA (1029bp) protein (343aa)
Putative 4-oxalomesaconate hydratase n=1 Tax=Variovorax paradoxus B4 RepID=T1XJG0_VARPD
Variovorax paradoxus strain MEDvA23 contig_38, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ30894.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
putative 4-oxalomesaconate hydratase
SCNpilot_cont_300_bf_scaffold_189_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7444..8721
DNA (1278bp) protein (426aa)
Transcriptional regulator, LysR family n=1 Tax=Variovorax paradoxus B4 RepID=T1XIJ5_VARPD
transcriptional regulator, LysR family
Transcriptional regulator, LysR family {ECO:0000313|EMBL:AGU52707.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_189_curated_10
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8728..9177)
DNA (450bp) protein (150aa)
Acetyltransferase n=1 Tax=Acidovorax sp. CF316 RepID=J1ENJ1_9BURK
Acetyltransferase {ECO:0000313|EMBL:EJE53821.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
N-acetyltransferase GCN5
SCNpilot_cont_300_bf_scaffold_189_curated_11
Aneurinibacillus migulanus, Aneurinibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(9214..9555)
DNA (342bp) protein (114aa)
Tetratricopeptide repeat protein n=1 Tax=Aneurinibacillus aneurinilyticus ATCC 12856 RepID=U1YEW8_ANEAE
Strain NCTC 7096 contig_54, whole genome shotgun sequence {ECO:0000313|EMBL:KIV56723.1}; TaxID=47500 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Aneurinibacillus group; Aneurinibacillus.;" source="Aneurinibacillus migulanus (Bacillus migulanus).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_189_curated_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9686..11329)
DNA (1644bp) protein (548aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI00036285D7
Membrane protein {ECO:0000313|EMBL:KJA11253.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
putative methyl-accepting chemotaxis protein
SCNpilot_cont_300_bf_scaffold_189_curated_13
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11486..12319)
DNA (834bp) protein (278aa)
Putative hydrolase of the alpha/beta superfamily n=1 Tax=Variovorax sp. CF313 RepID=J3CPG8_9BURK
Putative hydrolase of the alpha/beta superfamily {ECO:0000313|EMBL:EJL75601.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative alpha/beta hydrolase family protein
SCNpilot_cont_300_bf_scaffold_189_curated_14
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12467..14365
DNA (1899bp) protein (633aa)
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB n=1 Tax=Variovorax sp. CF313 RepID=J3CJ90_9BURK
Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB {ECO:0000313|EMBL:EJL72566.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
type II secretion system protein e
SCNpilot_cont_300_bf_scaffold_189_curated_15
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14505..15332
DNA (828bp) protein (276aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI0003756AF3
signal transduction protein
Putative signal transduction protein {ECO:0000313|EMBL:ACS20197.1}; TaxID=543728 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain S110).;"
SCNpilot_cont_300_bf_scaffold_189_curated_16
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15342..16187)
DNA (846bp) protein (282aa)
2-dehydro-3-deoxyphosphooctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078566}; EC=2.5.1.55 {ECO:0000256|HAMAP-Rule:MF_00056, ECO:0000256|SAAS:SAAS00078538};; 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; KDO-8-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00056}; Phospho-2-dehydro-3-deoxyoctonate aldolase {ECO:0000256|HAMAP-Rule:MF_00056}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadace
2-dehydro-3-deoxyphosphooctonate aldolase; K01627 2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:2.5.1.55]
2-dehydro-3-deoxyphosphooctonate aldolase n=1 Tax=Variovorax sp. CF313 RepID=J2TBU0_9BURK
SCNpilot_cont_300_bf_scaffold_189_curated_17
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16201..17394)
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036CA4F3
Uncharacterized protein {ECO:0000313|EMBL:EGP42955.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_189_curated_18
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17417..18376)
DNA (960bp) protein (320aa)
Trypsin-like serine protease with C-terminal PDZ domain containing protein n=1 Tax=Variovorax sp. CF313 RepID=J2KRD5_9BURK
Variovorax paradoxus strain MEDvA23 contig_70, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25212.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
SCNpilot_cont_300_bf_scaffold_189_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18476..20791)
DNA (2316bp) protein (772aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V307_VARPE
Uncharacterized protein {ECO:0000313|EMBL:ADU38073.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_189_curated_20
unknown

Not on your lists

21096..21284
DNA (189bp) protein (63aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036AB966
SCNpilot_cont_300_bf_scaffold_189_curated_21
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21290..21919)
DNA (630bp) protein (210aa)
Putative threonine efflux protein n=1 Tax=Acidovorax sp. CF316 RepID=J0UA16_9BURK
Putative threonine efflux protein {ECO:0000313|EMBL:EJE53002.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
amino acid transporter LysE
SCNpilot_cont_300_bf_scaffold_189_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21949..23628)
DNA (1680bp) protein (560aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J3CP15_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL75604.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_189_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23840..24106
DNA (267bp) protein (89aa)
Uncharacterized protein n=1 Tax=Variovorax sp. CF313 RepID=J2K5Y6_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJL75605.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_189_curated_24
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24291..26201
DNA (1911bp) protein (637aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
1,4-alpha-glucan branching protein; K00700 1,4-alpha-glucan branching enzyme [EC:2.4.1.18]
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Y6_VARPE
SCNpilot_cont_300_bf_scaffold_189_curated_25
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26198..28267
DNA (2070bp) protein (690aa)
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; Short=GMPMT {ECO:0000256|HAMAP-Rule:MF_02124};; EC=2.4.99.16 {ECO:0000256|HAMAP-Rule:MF_02124};; (1->4)-alpha-D-glucan:maltose-1-phosphate alpha-D-maltosyltransferase {ECO:0000256|HAMAP-Rule:MF_02124}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase n=1 Tax=Variovorax paradoxus RepID=UPI0003649644
alpha amylase catalytic subunit
SCNpilot_cont_300_bf_scaffold_189_curated_26
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28282..31626
DNA (3345bp) protein (1115aa)
trehalose synthase; K05343 maltose alpha-D-glucosyltransferase [EC:5.4.99.16]
Trehalose synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Y8_VARPE
Trehalose synthase {ECO:0000313|EMBL:ADU37192.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_189_curated_27
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31660..32442
DNA (783bp) protein (261aa)
Conserved TM helix repeat-containing protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Y9_VARPE
hypothetical protein
Conserved TM helix repeat-containing protein {ECO:0000313|EMBL:ADU37193.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_189_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32484..34646
DNA (2163bp) protein (721aa)
Glycogen operon protein GlgX homolog {ECO:0000256|SAAS:SAAS00046872}; EC=3.2.1.- {ECO:0000256|SAAS:SAAS00055489};; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
glycogen debranching protein glgx; K02438 glycogen operon protein GlgX [EC:3.2.1.-]
Glycogen debranching enzyme GlgX n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Z0_VARPE
SCNpilot_cont_300_bf_scaffold_189_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34643..36511
DNA (1869bp) protein (623aa)
Malto-oligosyltrehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Short=MTHase {ECO:0000256|PIRNR:PIRNR006337};; EC=3.2.1.141 {ECO:0000256|PIRNR:PIRNR006337};; 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; Maltooligosyl trehalose trehalohydrolase {ECO:0000256|PIRNR:PIRNR006337}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
malto-oligosyltrehalose trehalohydrolase; K01236 maltooligosyltrehalose trehalohydrolase [EC:3.2.1.141]
Malto-oligosyltrehalose trehalohydrolase n=1 Tax=Variovorax sp. CF313 RepID=J3CNY1_9BURK
SCNpilot_cont_300_bf_scaffold_189_curated_30
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

36501..41678
DNA (5178bp) protein (1726aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
Malto-oligosyltrehalose synthase n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V6Z2_VARPE
malto-oligosyltrehalose synthase
Displaying items 1-30 of 240 in total

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