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SCNpilot_cont_300_bf_scaffold_250_curated_9

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(10344..11588)

Top 3 Functional Annotations

Value Algorithm Source
Efflux transporter, RND family, MFP subunit n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2I9_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 415.0
  • Bit_score: 676
  • Evalue 1.30e-191
RND family efflux transporter mfp subunit; K03585 membrane fusion protein similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 415.0
  • Bit_score: 676
  • Evalue 4.00e-192
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADU35710.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.0
  • Coverage: 415.0
  • Bit_score: 676
  • Evalue 1.80e-191

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1245
ATGCCTGACCAAACCCGCTCCCGCTTCGCCCTGCTGTTCACGGCCATGGCCATCGCCGCGCTCGCAGCTTGCTCGCGCACCAGCGTGGAGACATCCGGCACATCGAAAGCGGCCGCCGCACCGGGAAAGGAAGTCGGCACCGTCACCCTCAAGCACGAGACGCTGGCGCAAAGCACCGAACTGCCCGGCCGCACCGCCGCGCCGGTCATCGCCGAGATCCGGCCGCAGGTCGGCGGCATCCTCAAGGAGCGGCTCTTCACCGAAGGCTCGCAGGTCAAGGCCGGCCAGGTGCTCTACCAGCTCGACCCGGCACCGCTGCAGGCGGCACACGCCAGCGCGCAGGCCAGCGTGCGCAAGGCCGAGTCGGCCCTGGCCACCGCGCGCACCGTGGCGCGCCGCAATGCGGAGCTGGTGAAGATCGACGCGATCAGCCGCCAGGTGTTCGACGAATCGCAGGCCGCCGAGCAACAAGCCGAGGCCGATCTCGGCGTGGCCCGCGCCGCCGAGCAGACCGCGCGCATCCAGCTCGGCTACACGCGCATCACCTCGCCGATCGCCGGCTGGGCCGAGCTGTCGACCGTCACGCCCGGCGCGCTGGTCACGGCCAACCAGGCGGCGGCGCTGACCACGGTGCAGCAGCTCGACCCCATCCACGTGCACGTCACCCAGTCCAGCCGCGAGCTGCTGCGGCTCAAGCGCGAACTCGCCAGCGGCCGCCTGCAGCGCGCGAGCGACGCCGAGGCACGCATACAGCTGGTGCTGGAAGACGGCAGCAAGTACCCGCATGCCGGCCGCCTCACCTTCAGCGGCGTCACCGTCGATGCCGGCACCGGCAGCGTCACGCTGCGCGCCGTGGTGCCCAACCCCGACAAGCTGCTGATGCCCGGCATGTACGTGCGCGCCGTGCTGCAGGAAGGCACCGACGCCACCGCACTGCTGGTGCCCCAGCAGGCGGTGACGCGCGCGCCCGACGGCAGCGCGTCGGCGCTGGTGGTCGACGCGGAGAACAAGGTCGCCAAGCGCCCCATCCAGGTCGGCCGCGCGGTCGGCACGCGCTGGCAGGTGCTCGAGGGCCTGGCCGCGGGCGACCGGGTGATGACCGAGGGCTCGCAGCGGGTGAAAGTGGGCGAGAAGGTAAAGGTGGTCGACCTCGGCGCCAAGGCCGCCAACGGCACTCCCTCCGGCCCGGTGGCCAGCGCGCAGCCCGACGCCGCCGATGCGGCTTCCAACACCGTGGCGCGCTGA
PROTEIN sequence
Length: 415
MPDQTRSRFALLFTAMAIAALAACSRTSVETSGTSKAAAAPGKEVGTVTLKHETLAQSTELPGRTAAPVIAEIRPQVGGILKERLFTEGSQVKAGQVLYQLDPAPLQAAHASAQASVRKAESALATARTVARRNAELVKIDAISRQVFDESQAAEQQAEADLGVARAAEQTARIQLGYTRITSPIAGWAELSTVTPGALVTANQAAALTTVQQLDPIHVHVTQSSRELLRLKRELASGRLQRASDAEARIQLVLEDGSKYPHAGRLTFSGVTVDAGTGSVTLRAVVPNPDKLLMPGMYVRAVLQEGTDATALLVPQQAVTRAPDGSASALVVDAENKVAKRPIQVGRAVGTRWQVLEGLAAGDRVMTEGSQRVKVGEKVKVVDLGAKAANGTPSGPVASAQPDAADAASNTVAR*