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SCNpilot_cont_300_bf_scaffold_250_curated_31

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 43293..44159

Top 3 Functional Annotations

Value Algorithm Source
LysR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI0003630B90 similarity UNIREF
DB: UNIREF100
  • Identity: 88.9
  • Coverage: 288.0
  • Bit_score: 514
  • Evalue 7.60e-143
LysR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 85.1
  • Coverage: 288.0
  • Bit_score: 495
  • Evalue 1.50e-137
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ADU35729.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.1
  • Coverage: 288.0
  • Bit_score: 495
  • Evalue 6.70e-137

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 867
ATGGACTTCGACCCCACGCTGCTGCGCGCCTTTGTCGCCGTCAAGGAAACCGGCGGCTTCACGCGCGCGGCGCAGCGGCTGCACCTGACGCAATCCGCCGTCAGCCACCAGATCCGGCGGCTCGAGGAGCAGGTGGGCCGGCCGCTGCTGCACCGCACGACGCGCCGCCTCACCGTCACCGAAGACGGGGAGGACTTTCTTCGCTACGCGCAGCAGATTCTGGACACCCTCGACGAAATGACCCGGCGCTTCCAGCCCTCGCCGATCTCGGGCGTGGTCCGTTTCGGCGCGCCGGACAACTTCATGGGCGACAGGTTGCCGCCGCTGCTGTCGCAGTTCGCGCGCGCCTTTCCGGCCACGCGCATGGAGGTCAGCGTCAGCATGCACCTGGACTTGCGCGCGATGATCCGCGCGGGCGAGCTCGACCTGGCAGTCGTGATGTCGCCGCCCGATTGCGTGGAAGGCACGCGGCTGCGGCGCTCGCAGCTGGTCTGGGTGGCGGCGGAAACCTTCGAGCCGCCGCCCGGCGCCTCGCTGCCGATGGCCTTTTCTCCGAAGCCCTGCGTGAACCGCGAGGTGGCGGGCGCCGCGCTCGATGCCGCGCCCTTCGAATGGCACGTGGTCTTCACGTCGGTGAGCCCGCACGGCATTCGCGCGGCGGTGCTGGCTGGGTTGGCTGTCACGGTGCTGGCGCGCGAGGACGTGGAGCCGGGCATGAAGATCGTCGACGGCCGCTATGGGCTGCCGCCGCTGCCGAGCGTCGATTTCTCGCTGATCTGGAGCGAGAGCGGGCGAACCGAATGCGCCTGCCGCTTCGGCCAGTTGATCCTCGAAATGCCGGACCTGCCGCTTTACGAGAAGGCATAA
PROTEIN sequence
Length: 289
MDFDPTLLRAFVAVKETGGFTRAAQRLHLTQSAVSHQIRRLEEQVGRPLLHRTTRRLTVTEDGEDFLRYAQQILDTLDEMTRRFQPSPISGVVRFGAPDNFMGDRLPPLLSQFARAFPATRMEVSVSMHLDLRAMIRAGELDLAVVMSPPDCVEGTRLRRSQLVWVAAETFEPPPGASLPMAFSPKPCVNREVAGAALDAAPFEWHVVFTSVSPHGIRAAVLAGLAVTVLAREDVEPGMKIVDGRYGLPPLPSVDFSLIWSESGRTECACRFGQLILEMPDLPLYEKA*