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SCNpilot_cont_300_bf_scaffold_250_curated_49

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 60725..61402

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V2M6_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 95.1
  • Coverage: 225.0
  • Bit_score: 423
  • Evalue 1.10e-115
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 95.1
  • Coverage: 225.0
  • Bit_score: 423
  • Evalue 3.30e-116
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.1
  • Coverage: 225.0
  • Bit_score: 423
  • Evalue 1.50e-115

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 678
ATGACCACCTCTCCGCCGCCAGTGCCGCCGGATTCCGGCCTGACCGACGCGTCCGCCGCGGAAGCGCCGCGTCCGGGCGAGGTCGATTTCCAGCTGGTCCAGCGCACGGTCGCGGGCGACCAGAAGGCGTTCGAGCTGTTGGTCATCAAGTACCAGCGCCGCATCGAGCGCCTGATCGGGCGCATGGTGCGCGATGTCGACCTGATCGAGGATATCGCGCAGGAAACCTTCATTCGTGCCTACCGCGCGCTGCACCAGTTCCGCGGAGAAGCGCAGTTCTACACCTGGCTCTACCGGATCGCCGTCAACACCGCCAAGAAGGCGCTGGTGGACATGAAGCGCGACCCGACCGTTTCCGAGGCCGCCCTGAGGCCTTCTTCTGAGGACGAAGATGAAACTTACCGTCCCGGAAACGAACCAACCACCGACGAAACCCCCGAATCGGTCCTGGCGGCGAACGAAATCGCCAGGGCTGTCGAAGCTGCCATGGAAGCACTCCCCGCCGAGTTGCGCCAGGCGGTCACGCTGCGCGAAATCGAGGGCATGAGTTACGAAGAGATCGCCGAGGTCATGGATTGCCCTATCGGCACGGTGCGTTCGCGTATTTTCCGGGCGCGCGAGGCCATTTCGGCCAGGGTCAAGCCGCTGCTGGACAACCAGTCCGGCAAACGTTGGTAA
PROTEIN sequence
Length: 226
MTTSPPPVPPDSGLTDASAAEAPRPGEVDFQLVQRTVAGDQKAFELLVIKYQRRIERLIGRMVRDVDLIEDIAQETFIRAYRALHQFRGEAQFYTWLYRIAVNTAKKALVDMKRDPTVSEAALRPSSEDEDETYRPGNEPTTDETPESVLAANEIARAVEAAMEALPAELRQAVTLREIEGMSYEEIAEVMDCPIGTVRSRIFRAREAISARVKPLLDNQSGKRW*