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SCNpilot_expt_1000_bf_scaffold_7562_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7562_curated_1
Nitrobacter sp. Nb-311A, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..468)
DNA (468bp) protein (156aa)
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; K03527 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [EC:1.17.1.2]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3X031_9BRAD
4-hydroxy-3-methylbut-2-enyl diphosphate reductase {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570}; EC=1.17.1.2 {ECO:0000256|HAMAP-Rule:MF_00191, ECO:0000256|SAAS:SAAS00096570};; TaxID=314253 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter sp. Nb-311A.;"
SCNpilot_expt_1000_bf_scaffold_7562_curated_2
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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1260..1736
DNA (477bp) protein (159aa)
ispA; geranyltranstransferase (EC:2.5.1.10); K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Geranyltranstransferase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3P412_AZOS1
Farnesyl-diphosphate synthase {ECO:0000313|EMBL:KJR64395.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
SCNpilot_expt_1000_bf_scaffold_7562_curated_3
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

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comp(1673..1969)
DNA (297bp) protein (99aa)
Uncharacterized protein {ECO:0000313|EMBL:KIJ71349.1}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
SCNpilot_expt_1000_bf_scaffold_7562_curated_4
Zea mays, Zea, Poales, commelinids, Streptophyta, Viridiplantae

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comp(1960..2154)
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Zea mays RepID=C4J4B4_MAIZE
Uncharacterized protein {ECO:0000313|EMBL:ACR36014.1}; TaxID=4577 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogoneae; Zea.;" source="Zea mays (Maize).;"
SCNpilot_expt_1000_bf_scaffold_7562_curated_5
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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2247..3491
DNA (1245bp) protein (415aa)
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae.;" source="Rhodospirillaceae bacterium BRH_c57.;"
1-deoxy-D-xylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U9Z3_METS4
SCNpilot_expt_1000_bf_scaffold_7562_curated_6
Novosphingobium nitrogenifigens, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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3808..4230
DNA (423bp) protein (141aa)
Hopanoid biosynthesis associated membrane protein HpnM n=1 Tax=Novosphingobium nitrogenifigens DSM 19370 RepID=F1Z7H8_9SPHN
Hopanoid biosynthesis associated membrane protein HpnM {ECO:0000313|EMBL:EGD59490.1}; TaxID=983920 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium nitrogenifigens DSM 19370.;"
hopanoid biosynthesis associated membrane protein HpnM
SCNpilot_expt_1000_bf_scaffold_7562_curated_7
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4442..5866)
DNA (1425bp) protein (475aa)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
pyruvate kinase; K00873 pyruvate kinase [EC:2.7.1.40] rbh
Pyruvate kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUR1_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_7562_curated_8
Methylocystis sp. SC2, Methylocystis, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5894..6292)
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Methylocystis rosea RepID=UPI0003623FE6
integral membrane protein
Putative integral membrane protein {ECO:0000313|EMBL:CCJ09015.1}; TaxID=187303 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylocystaceae; Methylocystis.;" source="Methylocystis sp. (strain SC2).;"
SCNpilot_expt_1000_bf_scaffold_7562_curated_9
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6355..7122
DNA (768bp) protein (256aa)
N-formylglutamate amidohydrolase
N-formylglutamate amidohydrolase n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8EJ92_METSB
N-formylglutamate amidohydrolase {ECO:0000313|EMBL:ACK52584.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
SCNpilot_expt_1000_bf_scaffold_7562_curated_10
Devosia sp. 17-2-E-8, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7196..7438
DNA (243bp) protein (81aa)
UPF0335 protein JP74_12325 {ECO:0000256|HAMAP-Rule:MF_00797}; TaxID=1535287 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. 17-2-E-8.;"
hypothetical protein
UPF0335 protein AZL_013340 n=2 Tax=Azospirillum lipoferum RepID=D3NU93_AZOS1
SCNpilot_expt_1000_bf_scaffold_7562_curated_11
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7607..9076)
DNA (1470bp) protein (490aa)
Two component sigma-54 specific Fis family transcriptional regulator {ECO:0000313|EMBL:GAK45661.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
two component sigma-54 specific Fis family transcriptional regulator rbh
Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUT1_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_7562_curated_12
unknown

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9362..9547
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7562_curated_13
unknown

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comp(9711..9968)
DNA (258bp) protein (86aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7562_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9978..10223)
DNA (246bp) protein (82aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3KKJ2_RHISN
Uncharacterized protein {ECO:0000313|EMBL:ACP22928.1}; TaxID=394 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium sp. (strain NGR234).;"
SCNpilot_expt_1000_bf_scaffold_7562_curated_15
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10272..10496)
DNA (225bp) protein (75aa)
Uncharacterized protein {ECO:0000313|EMBL:EWS57928.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
SCNpilot_expt_1000_bf_scaffold_7562_curated_16
Devosia chinhatensis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10799..11104
DNA (306bp) protein (102aa)
NAD(P) transhydrogenase subunit alpha {ECO:0000313|EMBL:KKB07487.1}; TaxID=429727 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia chinhatensis.;"
nicotinamide nucleotide transhydrogenase alpha2 subunit
Nicotinamide nucleotide transhydrogenase alpha2 subunit n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4Z294_9BRAD
SCNpilot_expt_1000_bf_scaffold_7562_curated_17
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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11106..12386
DNA (1281bp) protein (427aa)
pntB; NAD(P) transhydrogenase subunit beta; K00325 NAD(P) transhydrogenase subunit beta [EC:1.6.1.2] rbh
NAD(P) transhydrogenase subunit beta n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RA06_PHEZH rbh
NAD(P) transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; EC=1.6.1.2 {ECO:0000256|PIRNR:PIRNR000204};; Nicotinamide nucleotide transhydrogenase subunit beta {ECO:0000256|PIRNR:PIRNR000204}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
Displaying 17 items

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