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SCNpilot_expt_1000_bf_scaffold_5101_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5101_curated_1
Azospirillum brasilense, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..450)
DNA (450bp) protein (150aa)
Carbohydrate kinase {ECO:0000313|EMBL:AIB13135.1}; TaxID=192 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum brasilense.;"
putative carbohydrate/purine kinase
Putative carbohydrate/purine kinase n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AG22_AZOBR
SCNpilot_expt_1000_bf_scaffold_5101_curated_2
unknown

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763..1113
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5101_curated_3
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1149..1811)
DNA (663bp) protein (221aa)
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein n=1 Tax=Novispirillum itersonii RepID=UPI0003707D4C
nth; DNA-(apurinic or apyrimidinic site) lyase; K10773 endonuclease III [EC:4.2.99.18]
SCNpilot_expt_1000_bf_scaffold_5101_curated_4
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1935..2738)
DNA (804bp) protein (268aa)
dihydrodipicolinate reductase n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002ECC74B rbh
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
dihydrodipicolinate reductase; K00215 dihydrodipicolinate reductase [EC:1.3.1.26] rbh
SCNpilot_expt_1000_bf_scaffold_5101_curated_5
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2767..3333)
DNA (567bp) protein (189aa)
ribulose-phosphate 3-epimerase; K03687 molecular chaperone GrpE
Protein GrpE n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0UCH2_METS4
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_5101_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3364..4170)
DNA (807bp) protein (269aa)
hypothetical protein n=1 Tax=Kordiimonas gwangyangensis RepID=UPI00036B934F rbh
hrcA; heat-inducible transcription repressor; K03705 heat-inducible transcriptional repressor rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5101_curated_7
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4530..5243
DNA (714bp) protein (238aa)
rph; ribonuclease PH; K00989 ribonuclease PH [EC:2.7.7.56] rbh
Ribonuclease PH n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RNPH_PARL1 rbh
Ribonuclease PH {ECO:0000255|HAMAP-Rule:MF_00564}; Short=RNase PH {ECO:0000255|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000255|HAMAP-Rule:MF_00564};; tRNA nucleotidyltransferase {ECO:0000255|HAMAP-Rule:MF_00564}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5101_curated_8
Rhodospirillaceae bacterium BRH_c57, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5254..5871
DNA (618bp) protein (206aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1629718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillace
Non-canonical purine NTP pyrophosphatase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U073_9PROT
diTP/XTP pyrophosphatase
SCNpilot_expt_1000_bf_scaffold_5101_curated_9
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6004..7140
DNA (1137bp) protein (379aa)
Coproporphyrinogen III oxidase {ECO:0000313|EMBL:KAI95953.1}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I8H2_RHOVT rbh
SCNpilot_expt_1000_bf_scaffold_5101_curated_10
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7437..8672)
DNA (1236bp) protein (412aa)
Extracellular ligand-binding receptor {ECO:0000313|EMBL:CDO59818.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
putative branched-chain amino acid ABC transporter, periplasmic component rbh
Putative branched-chain amino acid ABC transporter, periplasmic component n=1 Tax=Azospirillum brasilense Sp245 RepID=G8AGF3_AZOBR rbh
SCNpilot_expt_1000_bf_scaffold_5101_curated_11
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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8702..9601
DNA (900bp) protein (300aa)
uroporphyrin-III C/tetrapyrrole methyltransferase; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198] rbh
Uroporphyrin-III C/tetrapyrrole (Corrin/porphyrin) methyltransferase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NYG5_AZOS1 rbh
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_5101_curated_12
Hyphomonas sp. T16B2, Hyphomonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9591..9959
DNA (369bp) protein (123aa)
UPF0102 protein HY2_05420 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=1280941 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Hyphomonas.;" source="Hyphomonas sp. T16B2.;"
UPF0102 protein BAL199_11231 n=1 Tax=alpha proteobacterium BAL199 RepID=A8U078_9PROT
hypothetical protein; K07460 putative endonuclease
SCNpilot_expt_1000_bf_scaffold_5101_curated_13
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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10004..10942
DNA (939bp) protein (313aa)
Glutathione synthetase {ECO:0000256|HAMAP-Rule:MF_00162, ECO:0000313|EMBL:CDO59823.1}; EC=6.3.2.3 {ECO:0000256|HAMAP-Rule:MF_00162, ECO:0000313|EMBL:CDO59823.1};; GSH synthetase {ECO:0000256|HAMAP-Rule:MF_00162}; Glutathione synthase {ECO:0000256|HAMAP-Rule:MF_00162}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
gshB; glutathione synthetase rbh
Glutathione synthetase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TRB3_TISMK rbh
SCNpilot_expt_1000_bf_scaffold_5101_curated_14
Burkholderia sp. H160, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10947..11645
DNA (699bp) protein (233aa)
Pirin domain protein n=1 Tax=Burkholderia sp. H160 RepID=B5WDK3_9BURK
Pirin domain protein {ECO:0000313|EMBL:EEA03473.1}; TaxID=516466 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. H160.;"
pirin; K06911
SCNpilot_expt_1000_bf_scaffold_5101_curated_15
Deinococcus phoenicis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(11748..12191)
DNA (444bp) protein (148aa)
endoribonuclease L-PSP n=1 Tax=Desulfurispora thermophila RepID=UPI00035F853B
Uncharacterized protein {ECO:0000313|EMBL:EYB66523.1}; TaxID=1476583 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus phoenicis.;"
hypothetical protein; K07567 TdcF protein
SCNpilot_expt_1000_bf_scaffold_5101_curated_16
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12283..13152)
DNA (870bp) protein (290aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HZ62_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS65195.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5101_curated_17
BJP_IG2102_Porphyrobacter_62_18, Porphyrobacter, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13330..13536)
DNA (207bp) protein (69aa)
Tax=BJP_IG2102_Porphyrobacter_62_18
MFS transporter n=1 Tax=Porphyrobacter sp. AAP82 RepID=UPI000312089B
ampG; MFS transporter; K08218 MFS transporter, PAT family, beta-lactamase induction signal transducer AmpG
Displaying 17 items

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