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SCNpilot_expt_1000_bf_scaffold_5918_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5918_curated_1
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..494)
DNA (492bp) protein (164aa)
Squalene-associated FAD-dependent desaturase n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUF3_9PROT
Squalene-associated FAD-dependent desaturase {ECO:0000313|EMBL:EHM03397.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
squalene-associated FAD-dependent desaturase
SCNpilot_expt_1000_bf_scaffold_5918_curated_2
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(562..1419)
DNA (858bp) protein (286aa)
Squalene synthase HpnD (Fragment) n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=G9ZUF4_9PROT rbh
Squalene synthase HpnD {ECO:0000313|EMBL:EHM03398.1}; Flags: Fragment;; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
squalene synthase HpnD
SCNpilot_expt_1000_bf_scaffold_5918_curated_3
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1416..2276)
DNA (861bp) protein (287aa)
hypothetical protein n=1 Tax=Sphingomonas sp. PR090111-T3T-6A RepID=UPI0003726BE2 rbh
Squalene synthase HpnC {ECO:0000313|EMBL:EHL99650.1}; Flags: Fragment;; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
squalene synthase HpnC
SCNpilot_expt_1000_bf_scaffold_5918_curated_4
Acetobacteraceae bacterium AT-5844, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2273..3430)
DNA (1158bp) protein (386aa)
Hopene-associated glycosyltransferase HpnB n=1 Tax=Acetobacteraceae bacterium AT-5844 RepID=H0A2F3_9PROT rbh
Hopene-associated glycosyltransferase HpnB {ECO:0000313|EMBL:EHL99651.1}; TaxID=1054213 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; unclassified Acetobacteraceae.;" source="Acetobacteraceae bacterium AT-5844.;"
hopene-associated glycosyltransferase HpnB rbh
SCNpilot_expt_1000_bf_scaffold_5918_curated_5
Cupriavidus taiwanensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3427..4056)
DNA (630bp) protein (210aa)
NAD-dependent epimerase/dehydratase; K00091 dihydroflavonol-4-reductase [EC:1.1.1.219] rbh
Putative NAD-dependent epimerase/dehydratase n=1 Tax=Cupriavidus taiwanensis (strain R1 / LMG 19424) RepID=B3RCA5_CUPTR rbh
Putative NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:CAQ72530.1}; TaxID=164546 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus taiwanensis (strain R1 / LMG 19424) (Ralstonia taiwanensis; (strain LMG 19424)).;"
SCNpilot_expt_1000_bf_scaffold_5918_curated_6
Phaeospirillum molischianum, Phaeospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4419..4721)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Phaeospirillum molischianum DSM 120 RepID=H8FQV3_PHAMO
Uncharacterized protein {ECO:0000313|EMBL:CCG40741.1}; TaxID=1150626 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Phaeospirillum.;" source="Phaeospirillum molischianum DSM 120.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5918_curated_7
unknown

Not on your lists

4907..5077
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5918_curated_8
unknown

Not on your lists

5087..5548
DNA (462bp) protein (154aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5918_curated_9
Gluconacetobacter diazotrophicus, Gluconacetobacter, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5413..6261)
DNA (849bp) protein (283aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) RepID=A9HCR6_GLUDA rbh
Uncharacterized protein {ECO:0000313|EMBL:CAP54981.1}; TaxID=272568 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconacetobacter.;" source="Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 /; PAl5).;"
SCNpilot_expt_1000_bf_scaffold_5918_curated_10
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6263..7168)
DNA (906bp) protein (302aa)
hypothetical protein n=1 Tax=Sphingomonas echinoides RepID=UPI00026CA0F6 rbh
Uncharacterized protein {ECO:0000313|EMBL:GAO55487.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5918_curated_11
Novosphingobium sp. MD-1, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7270..8112)
DNA (843bp) protein (281aa)
hopanoid biosynthesis associated protein HpnK n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B790ED rbh
Cellobiose phosphotransferase system celC {ECO:0000313|EMBL:GAO55488.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;"
hopanoid biosynthesis associated protein HpnK rbh
SCNpilot_expt_1000_bf_scaffold_5918_curated_12
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8120..9052)
DNA (933bp) protein (311aa)
radical SAM protein rbh
Radical SAM superfamily protein n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8JIH8_HYPSM rbh
Radical SAM superfamily protein {ECO:0000313|EMBL:CCB66975.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_5918_curated_13
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9049..9549)
DNA (501bp) protein (167aa)
hopanoid biosynthesis associated radical SAM protein HpnJ
Hopanoid biosynthesis associated radical SAM protein HpnJ n=1 Tax=Methylobacterium sp. (strain 4-46) RepID=B0U910_METS4
Hopanoid biosynthesis associated radical SAM protein HpnJ {ECO:0000313|EMBL:ACA20604.1}; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_5918_curated_14
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9582..10751)
DNA (1170bp) protein (390aa)
Putative (Ceramide) glucosyltransferase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G4B4_9BURK rbh
Putative (Ceramide) glucosyltransferase {ECO:0000313|EMBL:EDT09153.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
hopanoid biosynthesis associated glycosyl transferase protein HpnI; K00720 ceramide glucosyltransferase [EC:2.4.1.80] rbh
SCNpilot_expt_1000_bf_scaffold_5918_curated_15
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11002..12687
DNA (1686bp) protein (562aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y2S1_9PROT rbh
Tetratricopeptide TPR_2 repeat protein {ECO:0000313|EMBL:EGY00185.1}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5918_curated_16
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12697..13665)
DNA (969bp) protein (323aa)
homoserine O-succinyltransferase; K00651 homoserine O-succinyltransferase [EC:2.3.1.46]
Homoserine O-succinyltransferase n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2J1E8_RHOP2
Homoserine O-succinyltransferase {ECO:0000313|EMBL:ABD05712.1}; EC=2.3.1.46 {ECO:0000313|EMBL:ABD05712.1};; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
SCNpilot_expt_1000_bf_scaffold_5918_curated_17
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13768..14505)
DNA (738bp) protein (246aa)
Polysaccharide deacetylase n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QBF1_BREDI
Polysaccharide deacetylase {ECO:0000313|EMBL:EKY25020.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_5918_curated_18
Novosphingobium malaysiense, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14606..14932
DNA (327bp) protein (109aa)
PadR family transcriptional regulator {ECO:0000313|EMBL:KHK89630.1}; TaxID=1348853 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium malaysiense.;"
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. STM 3843 RepID=H0TFK5_9BRAD
transcriptional regulator protein; K10947 PadR family transcriptional regulator, regulatory protein PadR
SCNpilot_expt_1000_bf_scaffold_5918_curated_19
Bradyrhizobium sp. LTSPM299, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14929..15498
DNA (570bp) protein (190aa)
Membrane protein {ECO:0000313|EMBL:KJC56325.1}; TaxID=1619233 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. LTSPM299.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) RepID=A5EAC1_BRASB
SCNpilot_expt_1000_bf_scaffold_5918_curated_20
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15510..16247
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Rhizobium sp. AP16 RepID=J2LJX9_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:GAJ91974.1}; TaxID=1220581 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rhizogenes NBRC 13257.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5918_curated_21
unknown

Not on your lists

16328..16399
DNA (72bp) protein (24aa)

This feature has no annotations

Displaying 21 items

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