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SCNpilot_expt_1000_bf_scaffold_14648_curated

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Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_14648_curated_1
Sphingomonas sp. LH128, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..258
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Gayadomonas joobiniege RepID=UPI00035E3462
Ni/Fe-hydrogenase 1 b-type cytochrome subunit {ECO:0000313|EMBL:EJU10325.1}; TaxID=473781 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. LH128.;"
cytochrome B
SCNpilot_expt_1000_bf_scaffold_14648_curated_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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255..1238
DNA (984bp) protein (328aa)
NHL repeat containing protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D944_9BACT
NHL repeat containing protein {ECO:0000313|EMBL:EDY17089.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_14648_curated_3
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1409..2014
DNA (606bp) protein (202aa)
Uracil-DNA glycosylase n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SFK4_9RHIZ
Uracil-DNA glycosylase {ECO:0000313|EMBL:AHB48749.1}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
uracil-DNA glycosylase superfamily protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
SCNpilot_expt_1000_bf_scaffold_14648_curated_4
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2098..4692)
DNA (2595bp) protein (865aa)
DNA ligase D n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3HZA0_9BRAD rbh
DNA ligase D {ECO:0000313|EMBL:EJN10421.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
ligD; ATP-dependent DNA ligase; K01971 DNA ligase (ATP) [EC:6.5.1.1] rbh
SCNpilot_expt_1000_bf_scaffold_14648_curated_5
unknown

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comp(4849..5019)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_14648_curated_6
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5302..5709
DNA (408bp) protein (136aa)
ATP-dependent DNA ligase; K10979 DNA end-binding protein Ku
Probable DNA repair protein PHZ_c3262 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RAS3_PHEZH
Non-homologous end joining protein Ku {ECO:0000256|HAMAP-Rule:MF_01875}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_14648_curated_7
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5759..6544)
DNA (786bp) protein (262aa)
Arabinose ABC transporter permease {ECO:0000313|EMBL:EZP74212.1}; TaxID=13689 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis (Pseudomonas paucimobilis).;"
Arabinose ABC transporter permease n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0I434_9SPHN rbh
sugar permease of the major facilitator superfamily (MFS) rbh
Displaying 7 items

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