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SCNpilot_expt_1000_bf_scaffold_6110_curated

Search features with annotation key words

Displaying items 1-30 of 47 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6110_curated_1
Bradyrhizobiaceae bacterium SG-6C, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29..1126)
DNA (1098bp) protein (366aa)
Dolichol-phosphate mannosyltransferase-like protein n=1 Tax=Bradyrhizobiaceae bacterium SG-6C RepID=F7QPD2_9BRAD rbh
Dolichol-phosphate mannosyltransferase-like protein {ECO:0000313|EMBL:EGP06903.1}; EC=2.4.1.83 {ECO:0000313|EMBL:EGP06903.1};; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;"
dolichyl-phosphate beta-D-mannosyltransferase; K00721 dolichol-phosphate mannosyltransferase [EC:2.4.1.83] rbh
SCNpilot_expt_1000_bf_scaffold_6110_curated_2
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1277..1690
DNA (414bp) protein (138aa)
Putative response regulator receiver protein n=1 Tax=Rhodovulum sp. PH10 RepID=J6LGW9_9RHOB
Putative response regulator receiver protein {ECO:0000313|EMBL:EJW12193.1}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
response regulator receiver protein
SCNpilot_expt_1000_bf_scaffold_6110_curated_3
unknown

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comp(1717..1875)
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_4
unknown

Not on your lists

comp(1894..2106)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_5
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2128..2283)
DNA (156bp) protein (52aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) RepID=Q0B5E8_BURCM
Uncharacterized protein {ECO:0000313|EMBL:ABI90625.1}; TaxID=339670 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (Burkholderia; cepacia (strain AMMD)).;"
SCNpilot_expt_1000_bf_scaffold_6110_curated_6
unknown

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2426..2935
DNA (510bp) protein (170aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_7
BJP_IG2158_Rhodobacterales_64_37, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3075..4244
DNA (1170bp) protein (390aa)
Tax=BJP_IG2158_Rhodobacterales_64_37
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI000377DAD4 rbh
cyclopropane-fatty-acyl-phospholipid synthase rbh
SCNpilot_expt_1000_bf_scaffold_6110_curated_8
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4591..4773
DNA (183bp) protein (61aa)
cycA; cytochrome c2; K08738 cytochrome c
Cytochrome c2 n=1 Tax=Hyphomicrobium sp. (strain MC1) RepID=F8J8U8_HYPSM
Cytochrome c2 {ECO:0000313|EMBL:CCB64863.1}; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6110_curated_9
Aurantimonas manganoxydans, Aurantimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4961..5713
DNA (753bp) protein (251aa)
Electron transfer flavoprotein beta-subunit n=1 Tax=Manganese-oxidizing bacterium (strain SI85-9A1) RepID=Q1YG88_MOBAS rbh
Electron transfer flavoprotein beta-subunit {ECO:0000313|EMBL:EAS49337.1}; TaxID=287752 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aurantimonas.;" source="Manganese-oxidizing bacterium (strain SI85-9A1).;"
electron transfer flavoprotein subunit alpha/beta; K03521 electron transfer flavoprotein beta subunit rbh
SCNpilot_expt_1000_bf_scaffold_6110_curated_10
unknown

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comp(5958..6089)
DNA (132bp) protein (44aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_11
unknown

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comp(6090..6197)
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_12
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6360..6638
DNA (279bp) protein (93aa)
Electron transfer flavoprotein subunit alpha {ECO:0000313|EMBL:GAK44456.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
electron transfer flavoprotein subunit beta n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI000376A140
electron transfer flavoprotein subunit alpha
SCNpilot_expt_1000_bf_scaffold_6110_curated_13
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6650..7528
DNA (879bp) protein (293aa)
3-hydroxybutyryl-CoA dehydrogenase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F528 rbh
3-hydroxybutyryl-CoA dehydrogenase; K00074 3-hydroxybutyryl-CoA dehydrogenase [EC:1.1.1.157] rbh
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:ABL70639.1}; EC=1.1.1.35 {ECO:0000313|EMBL:ABL70639.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_1000_bf_scaffold_6110_curated_14
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7707..8273)
DNA (567bp) protein (189aa)
Uncharacterized protein {ECO:0000313|EMBL:CEO91182.1}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
Thiol:disulfide interchange protein TlpA n=1 Tax=Oceanibaculum indicum P24 RepID=K2JUT5_9PROT
tlpA1; thiol:disulfide interchange protein TlpA
SCNpilot_expt_1000_bf_scaffold_6110_curated_15
Anaeromyxobacter sp. PSR-1, Anaeromyxobacter, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8812..9183)
DNA (372bp) protein (124aa)
Uncharacterized protein {ECO:0000313|EMBL:GAO04809.1}; TaxID=1300915 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Anaeromyxobacteraceae; Anaeromyxobacter.;" source="Anaeromyxobacter sp. PSR-1.;"
hypothetical protein n=1 Tax=Salinispora pacifica RepID=UPI000367360B
SCNpilot_expt_1000_bf_scaffold_6110_curated_16
Mesorhizobium sp. L48C026A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9365..9676
DNA (312bp) protein (104aa)
UPI0003CFF4BD related cluster n=1 Tax=unknown RepID=UPI0003CFF4BD
Argininosuccinate lyase {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211019}; Short=ASAL {ECO:0000256|HAMAP-Rule:MF_00006};; EC=4.3.2.1 {ECO:0000256|HAMAP-Rule:MF_00006, ECO:0000256|SAAS:SAAS00211017};; Arginosuccinase {ECO:0000256|HAMAP-Rule:MF_00006}; TaxID=1287182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. L48C026A00.;"
argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1]
SCNpilot_expt_1000_bf_scaffold_6110_curated_17
unknown

Not on your lists

9673..9816
DNA (144bp) protein (48aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_18
Defluviimonas sp. 20V17, Defluviimonas, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9819..11090
DNA (1272bp) protein (424aa)
Diaminopimelate decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738}; Short=DAP decarboxylase {ECO:0000256|HAMAP-Rule:MF_02120};; Short=DAPDC {ECO:0000256|HAMAP-Rule:MF_02120};; EC=4.1.1.20 {ECO:0000256|HAMAP-Rule:MF_02120, ECO:0000256|RuleBase:RU003738};; TaxID=1417296 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Defluviimonas.;" source="Defluviimonas sp. 20V17.;"
Diaminopimelate decarboxylase n=1 Tax=Roseobacter sp. AzwK-3b RepID=A6FLT1_9RHOB rbh
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] rbh
SCNpilot_expt_1000_bf_scaffold_6110_curated_19
unknown

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comp(11661..11975)
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_20
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12703..13383
DNA (681bp) protein (227aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTI5_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS63218.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_6110_curated_21
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13530..14045)
DNA (516bp) protein (172aa)
hypoxanthine phosphoribosyltransferase n=1 Tax=Martelella mediterranea RepID=UPI0003714C57
hpt; hypoxanthine phosphoribosyl transferase (EC:2.4.2.8); K00760 hypoxanthine phosphoribosyltransferase [EC:2.4.2.8]
Hypoxanthine phosphoribosyl transferase {ECO:0000313|EMBL:CCB67270.1}; EC=2.4.2.8 {ECO:0000313|EMBL:CCB67270.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
SCNpilot_expt_1000_bf_scaffold_6110_curated_22
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14045..14770)
DNA (726bp) protein (242aa)
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003B51D44
Zinc finger-domain-containing protein {ECO:0000313|EMBL:GAK44446.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Zinc finger-domain-containing protein
SCNpilot_expt_1000_bf_scaffold_6110_curated_23
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14839..15531
DNA (693bp) protein (231aa)
Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) {ECO:0000313|EMBL:CDO59262.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
cell division ATP-binding protein FtsE; K09812 cell division transport system ATP-binding protein rbh
Cell division ATP-binding protein FtsE n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTI1_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_6110_curated_24
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16003..16431
DNA (429bp) protein (143aa)
Conserved protein {ECO:0000313|EMBL:GAK44444.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein; K09811 cell division transport system permease protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTI0_PARL1
SCNpilot_expt_1000_bf_scaffold_6110_curated_25
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16486..17058
DNA (573bp) protein (191aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTH9_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS63212.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_6110_curated_26
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17055..17744
DNA (690bp) protein (230aa)
phospholipid/glycerol acyltransferase; K00655 1-acyl-sn-glycerol-3-phosphate acyltransferase [EC:2.3.1.51]
Phospholipid/glycerol acyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTH8_PARL1
Phospholipid/glycerol acyltransferase {ECO:0000313|EMBL:ABS63211.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_6110_curated_27
unknown

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comp(17793..17978)
DNA (186bp) protein (62aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_28
unknown

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comp(18015..18176)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6110_curated_29
RIFOXYC2_FULL_Syntrophobacterales_60_23_curated, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(18180..18482)
DNA (303bp) protein (101aa)
Tax=RIFOXYC2_FULL_Syntrophobacterales_60_23_curated
Uncharacterized protein n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SAG3_9RHOB
SCNpilot_expt_1000_bf_scaffold_6110_curated_30
unknown

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comp(18654..18788)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying items 1-30 of 47 in total

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