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SCNpilot_expt_1000_bf_scaffold_8355_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8355_curated_1
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..672
DNA (672bp) protein (224aa)
methionine ABC transporter permease n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI00036E5E2F rbh
D-methionine ABC transporter permease protein {ECO:0000313|EMBL:GAK68713.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
metI; D-and L-methionine ABC transporter, permease protein rbh
SCNpilot_expt_1000_bf_scaffold_8355_curated_2
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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715..1491
DNA (777bp) protein (259aa)
methionine ABC transporter substrate-binding protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0002FA65E5 rbh
Dioxygenase {ECO:0000313|EMBL:KDP76701.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
metQ; probabable D-methionine-binding lipoprotein metQ; K02073 D-methionine transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_8355_curated_3
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1712..2623)
DNA (912bp) protein (304aa)
Thiamine biosynthesis protein ApbE {ECO:0000313|EMBL:KDP72986.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
NosX n=1 Tax=Achromobacter cycloclastes RepID=O68482_ACHCY rbh
ApbE family lipoprotein; K03734 thiamine biosynthesis lipoprotein rbh
SCNpilot_expt_1000_bf_scaffold_8355_curated_4
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2628..3209)
DNA (582bp) protein (194aa)
Copper chaperone {ECO:0000313|EMBL:KDP72987.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
NosL n=1 Tax=Achromobacter cycloclastes RepID=O68481_ACHCY rbh
NosL family protein
SCNpilot_expt_1000_bf_scaffold_8355_curated_5
Achromobacter cycloclastes, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3206..4027)
DNA (822bp) protein (274aa)
Accessory protein NosY n=1 Tax=Achromobacter cycloclastes RepID=O68480_ACHCY rbh
Accessory protein NosY {ECO:0000313|EMBL:AAD09160.1}; NosY protein {ECO:0000313|EMBL:CAA75428.1}; Flags: Precursor;; TaxID=223 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter cycloclastes.;"
nitrous oxide maturation protein NosY; K01992 ABC-2 type transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_8355_curated_6
unknown

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4324..4416
DNA (93bp) protein (31aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8355_curated_7
Achromobacter cycloclastes, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4885..6213)
DNA (1329bp) protein (443aa)
Accessory protein NosD n=1 Tax=Achromobacter cycloclastes RepID=O68478_ACHCY rbh
Accessory protein NosD {ECO:0000313|EMBL:AAD09158.1}; NosD protein {ECO:0000313|EMBL:CAA75426.1}; Flags: Precursor;; TaxID=223 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter cycloclastes.;"
periplasmic copper-binding; K07218 nitrous oxidase accessory protein rbh
SCNpilot_expt_1000_bf_scaffold_8355_curated_8
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6217..7314)
DNA (1098bp) protein (366aa)
Nitrous-oxide reductase n=3 Tax=Proteobacteria RepID=NOSZ_ACHCY rbh
Nitrous-oxide reductase {ECO:0000256|HAMAP-Rule:MF_00716}; EC=1.7.2.4 {ECO:0000256|HAMAP-Rule:MF_00716};; N(2)OR {ECO:0000256|HAMAP-Rule:MF_00716}; N2O reductase {ECO:0000256|HAMAP-Rule:MF_00716}; Flags: Precursor;; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
nitrous-oxide reductase (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.2.4] rbh
C-terminus only, connects to SCNpilot_expt_1000_bf_scaffold_6433_curated_8. Rose Kantor (12/9/15)
Displaying 8 items

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