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SCNpilot_expt_1000_bf_scaffold_10351_curated

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Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10351_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..224
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERP0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR77795.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10351_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

221..1354
DNA (1134bp) protein (378aa)
Aspartate aminotransferase AspC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C9U4_9RHIZ rbh
Aspartate aminotransferase AspC {ECO:0000313|EMBL:EYR77794.1}; EC=2.6.1.1 {ECO:0000313|EMBL:EYR77794.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
aspC3; aspartate aminotransferase AspC (EC:2.6.1.1) rbh
SCNpilot_expt_1000_bf_scaffold_10351_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1426..2145)
DNA (720bp) protein (240aa)
Methionine synthase I n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYS0_9RHIZ rbh
Methionine synthase I {ECO:0000313|EMBL:EYR77792.1}; EC=2.1.1.13 {ECO:0000313|EMBL:EYR77792.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bmt; betaine-homocysteine methyltransferase; K00548 5-methyltetrahydrofolate--homocysteine methyltransferase [EC:2.1.1.13] rbh
SCNpilot_expt_1000_bf_scaffold_10351_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2505..2744)
DNA (240bp) protein (80aa)
Glycine betaine transport ATP-binding protein OpuAA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU63_9RHIZ
Glycine betaine transport ATP-binding protein OpuAA {ECO:0000313|EMBL:EYR77791.1}; EC=3.6.3.32 {ECO:0000313|EMBL:EYR77791.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
opuAA2; glycine betaine transport ATP-binding protein OpuAA (EC:3.6.3.32)
SCNpilot_expt_1000_bf_scaffold_10351_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3529..3951)
DNA (423bp) protein (141aa)
Glycine betaine/carnitine transport permease protein GbuB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ERN6_9RHIZ
Glycine betaine/carnitine transport permease protein GbuB {ECO:0000313|EMBL:EYR77790.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
QAT familiy ABC transporter, permease protein
SCNpilot_expt_1000_bf_scaffold_10351_curated_6
Rhizobium sp. PDO1-076, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4200..5099)
DNA (900bp) protein (300aa)
Glycine/betaine ABC transporter substrate-binding protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEU2_9RHIZ rbh
ABC-type glycine betaine transport, periplasmic subunit {ECO:0000313|EMBL:EHS49780.1}; Flags: Precursor;; TaxID=1125979 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. PDO1-076.;"
QAT familiy ABC transporter, periplasmic substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_10351_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5957..6100)
DNA (144bp) protein (48aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWZ4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80626.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10351_curated_8
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

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comp(6333..6566)
DNA (234bp) protein (78aa)
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
Uncharacterized protein n=1 Tax=Vibrio vulnificus (strain YJ016) RepID=Q7MDZ7_VIBVY
SCNpilot_expt_1000_bf_scaffold_10351_curated_9
unknown

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comp(6654..7313)
DNA (660bp) protein (220aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10351_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7424..7822
DNA (399bp) protein (133aa)
Cobyric acid synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCE9_9RHIZ
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobQ; cobyric acid synthase CobQ
SCNpilot_expt_1000_bf_scaffold_10351_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7970..9625
DNA (1656bp) protein (552aa)
Putative peptidoglycan-binding domain-containing protein {ECO:0000313|EMBL:EYR80628.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Methylomicrobium buryatense RepID=UPI000367389B
Tb04.3M17.610; hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10351_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10068..10295
DNA (228bp) protein (76aa)
Cobalt transporter subunit CbtB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBX7_9RHIZ
Cobalt transporter subunit CbtB {ECO:0000313|EMBL:EYR80629.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cbtB; putative cobalt transporter, subunit CbtB
SCNpilot_expt_1000_bf_scaffold_10351_curated_13
unknown

Not on your lists

comp(10532..10768)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_10351_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11064..11324
DNA (261bp) protein (87aa)
Adenosylcobinamide kinase {ECO:0000313|EMBL:EYR80631.1}; EC=2.7.1.156 {ECO:0000313|EMBL:EYR80631.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cobP; bifunctional adenosylcobalamin biosynthesis protein CobP
Bifunctional adenosylcobalamin biosynthesis protein CobP n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LJU3_RHITR
Displaying 14 items

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