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SCNpilot_expt_1000_bf_scaffold_1697_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1697_curated_1
unknown

Not on your lists

comp(256..429)
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1697_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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741..1997
DNA (1257bp) protein (419aa)
Cytochrome c-type biogenesis protein CycK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2S5_9RHIZ rbh
Cytochrome c-type biogenesis protein CycK {ECO:0000313|EMBL:EYR81182.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cycK; cytochrome c-type biogenesis protein CycK rbh
SCNpilot_expt_1000_bf_scaffold_1697_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1994..2452
DNA (459bp) protein (153aa)
Cytochrome c-type biogenesis protein CcmH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY60_9RHIZ
Cytochrome c-type biogenesis protein CcmH {ECO:0000313|EMBL:EYR81183.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ccmH; cytochrome c-type biogenesis protein; K02200 cytochrome c-type biogenesis protein CcmH
SCNpilot_expt_1000_bf_scaffold_1697_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2587..4152
DNA (1566bp) protein (522aa)
Putative periplasmic serine endoprotease DegP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVC0_9RHIZ rbh
Putative periplasmic serine endoprotease DegP {ECO:0000313|EMBL:EYR81184.1}; EC=3.4.21.107 {ECO:0000313|EMBL:EYR81184.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dop; serine protease rbh
SCNpilot_expt_1000_bf_scaffold_1697_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4449..5132
DNA (684bp) protein (228aa)
Transcriptional regulatory protein CusR n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDU0_9RHIZ rbh
Transcriptional regulatory protein CusR {ECO:0000313|EMBL:EYR81185.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cusR; transcriptional regulatory protein CusR rbh
SCNpilot_expt_1000_bf_scaffold_1697_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5137..6561
DNA (1425bp) protein (475aa)
Sensor protein IrlS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTR5_9RHIZ rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ragB; sensor histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_1697_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6592..9543
DNA (2952bp) protein (984aa)
Glutamate-ammonia-ligase adenylyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2R9_9RHIZ rbh
Glutamate-ammonia-ligase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015000}; EC=2.7.7.42 {ECO:0000256|HAMAP-Rule:MF_00802, ECO:0000256|SAAS:SAAS00015004};; Glutamine-synthase adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; [Glutamate--ammonia-ligase] adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00802}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
glnE; Putative glutamate-ammonia-ligase adenylyltransferase (EC:2.7.7.42) rbh
SCNpilot_expt_1000_bf_scaffold_1697_curated_8
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9533..10027)
DNA (495bp) protein (165aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans 1NES1 RepID=N0B2V4_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:AGK57333.1}; TaxID=670307 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans 1NES1.;"
SCNpilot_expt_1000_bf_scaffold_1697_curated_9
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10125..10592
DNA (468bp) protein (156aa)
MarR family transcriptional regulator protein {ECO:0000313|EMBL:AIC27185.1}; TaxID=1432050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli bv. mimosae str. IE4771.;"
Putative transcriptional regulator, MarR family n=1 Tax=Rhizobium mesoamericanum STM3625 RepID=K0PSX1_9RHIZ
putative transcriptional regulator, MarR family
SCNpilot_expt_1000_bf_scaffold_1697_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10609..12897)
DNA (2289bp) protein (763aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Non-motile and phage-resistance protein PleC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY55_9RHIZ rbh
pleC2; Non-motile and phage-resistance protein PleC (EC:2.7.13.3) rbh
SCNpilot_expt_1000_bf_scaffold_1697_curated_11
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13111..13803)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Pseudaminobacter salicylatoxidans RepID=UPI0003651309 rbh
transcriptional regulator-like rbh
Transcriptional regulator-like protein {ECO:0000313|EMBL:ABB10945.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
SCNpilot_expt_1000_bf_scaffold_1697_curated_12
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13877..14245
DNA (369bp) protein (123aa)
glyoxalase/bleomycin resistance protein/dioxygenase
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Burkholderia sp. (strain 383) RepID=Q399B7_BURS3
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:ABB10944.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
SCNpilot_expt_1000_bf_scaffold_1697_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14255..16474)
DNA (2220bp) protein (740aa)
Aminopeptidase N {ECO:0000313|EMBL:EYR81189.1}; EC=3.4.11.2 {ECO:0000313|EMBL:EYR81189.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Aminopeptidase N n=1 Tax=Rhizobium sp. CF080 RepID=J2JKD8_9RHIZ rbh
aminopeptidase N (EC:3.4.11.2) rbh
Displaying 13 items

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