ggKbase home page

SCNpilot_expt_1000_bf_scaffold_14632_curated

Search features with annotation key words

Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_14632_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..234
DNA (234bp) protein (78aa)
Transcriptional regulator, AsnC family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CP59_9RHIZ
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:EYR81782.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AsnC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_14632_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

563..1426
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ER82_9RHIZ rbh
Putative extracellular nuclease {ECO:0000313|EMBL:EYR81784.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_14632_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1501..2430
DNA (930bp) protein (310aa)
Diaminopimelate epimerase DAP epimerase Phzf n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTN9_9RHIZ rbh
Diaminopimelate epimerase DAP epimerase Phzf {ECO:0000313|EMBL:EYR81785.1}; EC=5.1.1.7 {ECO:0000313|EMBL:EYR81785.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
phenazine biosynthesis protein; K06998 rbh
SCNpilot_expt_1000_bf_scaffold_14632_curated_4
Devosia epidermidihirudinis, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2792..3169)
DNA (378bp) protein (126aa)
Polysaccharide deacetylase {ECO:0000313|EMBL:KKC38315.1}; TaxID=1293439 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia epidermidihirudinis.;"
Lipoprotein n=1 Tax=Brucella inopinata BO1 RepID=E0DP37_9RHIZ
polysaccharide deacetylase
SCNpilot_expt_1000_bf_scaffold_14632_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4078..4287
DNA (210bp) protein (70aa)
Cold shock protein CspA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGF1_9RHIZ
Cold shock protein {ECO:0000313|EMBL:EYR82908.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cold-shock protein; K03704 cold shock protein (beta-ribbon, CspA family)
SCNpilot_expt_1000_bf_scaffold_14632_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4541..4741
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR82905.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=uncultured organism RepID=T1W985_9ZZZZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_14632_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5027..5401)
DNA (375bp) protein (125aa)
Uncharacterized protein {ECO:0000313|EMBL:KDP72306.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Uncharacterized protein n=1 Tax=Rhizobium sp. CF142 RepID=J2KYX4_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_14632_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5508..6158)
DNA (651bp) protein (217aa)
Putative alpha,alpha-trehalose-phosphate synthase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHS2_9RHIZ rbh
Alpha,alpha-trehalose-phosphate synthase (UDP-forming) {ECO:0000256|RuleBase:RU362045}; EC=2.4.1.15 {ECO:0000256|RuleBase:RU362045};; Osmoregulatory trehalose synthesis protein A {ECO:0000256|RuleBase:RU362045}; Trehalose-6-phosphate synthase {ECO:0000256|RuleBase:RU362045}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
otsA; alpha,alpha-trehalose-phosphate synthase (UDP-forming)
Displaying 8 items

View Taxonomy