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SCNpilot_expt_1000_bf_scaffold_12528_curated_6

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(6310..6528)

Top 3 Functional Annotations

Value Algorithm Source
GntR family transcriptional regulator n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHP1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 95.5
  • Coverage: 66.0
  • Bit_score: 128
  • Evalue 2.90e-27
GntR family transcriptional regulator {ECO:0000313|EMBL:EYR78968.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.5
  • Coverage: 66.0
  • Bit_score: 128
  • Evalue 4.10e-27
transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 72.3
  • Coverage: 65.0
  • Bit_score: 97
  • Evalue 2.30e-18

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 219
TTGGGCAACTTGGCGCTTGAGCCGCTGGAGCGGCCGGAAGGCATGACGACGCATGAATATGCGCATCGGCGCCTGCGCCAGGCGATCATGGTGGGCTCGATCCGGCCGGGCGAGGCACTGACCATCCGCGGCATCGCCGAGGCGATGGAGAGCAGCCCCACGCCGGTGCGCGAGGCCTTGCGGCGGCTTTCCTCCGAGGNNNNNNNNNNNNNNGCATGA
PROTEIN sequence
Length: 73
LGNLALEPLERPEGMTTHEYAHRRLRQAIMVGSIRPGEALTIRGIAEAMESSPTPVREALRRLSSEXXXXXA*