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SCNpilot_expt_1000_bf_scaffold_4021_curated_8

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5335..7161)

Top 3 Functional Annotations

Value Algorithm Source
Holdfast attachment protein C {ECO:0000313|EMBL:EYR79640.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.4
  • Coverage: 609.0
  • Bit_score: 1151
  • Evalue 0.0
Holdfast attachment protein C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV69_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 95.4
  • Coverage: 609.0
  • Bit_score: 1151
  • Evalue 0.0
  • rbh
ABC transporter; K15738 ATP-binding cassette, subfamily F, uup similarity KEGG
DB: KEGG
  • Identity: 86.4
  • Coverage: 609.0
  • Bit_score: 1059
  • Evalue 0.0
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1827
TTGGCACCGCCCATTCTCAAACTCGACGACATCTTCCTCAGCTTCGGCGGCACGCCGCTGCTGTCAGGCGCGAGCCTGCAGGTGGAGCCGGGCGAGCGCATCTGCCTCGTCGGCCGCAACGGCTCGGGCAAGTCGACGCTGATGAAGATCGCCGCCGGCCTTGCCGAGGCGCAGTCGGGCGAGGTCTTCCGCCATCCCTCCGCGACCATCCGCTACCTGCACCAGGCCCCCGATTTCGACGGCTACGACACCGTCGCCGCCTATGCCGAGGCGGGCCTCGGCCCGAGCGACGACCCGTACCGCGTCACCTATCTCCTCGAACATCTCGGCCTTTCCGGCAACGAGGACCCGAAGTCGCTTTCGGGCGGCGAGGCGCGCCGGGCGGCGCTTGCCCGCGTCATGGCGCCGGAGCCGGACATCCTGCTCCTCGACGAGCCGACCAACCATCTCGACCTTCCCACCATCGAATGGCTGGAAGGCGAGCTGCAATCGACCCGCTCGGCCCTCGTCGTCATCTCGCACGACCGCCGCTTCCTCGAAAAGGTCTCCAACGCCACCGTGTGGCTCGACCGCGGCCAGTCGCGCCGTCTCAATCGCGGCTTTGCCCATTTCGAGGCCTGGCGCGACGAGGTGCTGGAGGCCGAGGAACTGGAACAGCACAAGCTCGGCAAGGCCATCGAGCGCGAGGAGCACTGGCTGCGCTACGGCGTGACGGCCCGGCGCAAGCGCAACATGCGCCGCCTCGGCGCGCTGCACGACCTGCGTGCCCGCTACCGCGGCCACAAGGGCCCGCAGGGCAGCGTGCAGGCGAGCGCCTCCGACGCGCAGGAATCCGGCAAGCTGGTCATCGAGGCGGAGAAGATCACCAAGAGCTACGGCGAGCGCACCATCGTCGCGCCCTTCTCGATCCGTGTCCACCGCGGCGACTGCATCGGCCTCGTCGGCCCCAACGGCGCCGGCAAGACGACGCTGCTGAAGATGCTGACCGGTGAACTCGCGCCCGACAGCGGCTCGGTCAAGCTCGGCACGAACCTGGAAATCGCCACGCTCGACCAGCGCCGCGAGGACCTGAACCTCGACGACACGCTCGCCCACTACCTCACGGACGGGCGCGGCGAGACGCTGCTGGTCAATGGCGAGCAGCGTCATGTCACCGGTTACATGAAGGAATTCCTGTTCCAGCCGGAACAGGCCCGCACTCCCATCCGCAACCTGTCGGGCGGCGAGCGTGCCCGGCTGATGCTGGCCCGCATCCTCTCGCGCCCGACGAACCTGCTCATCCTCGACGAGCCGACCAACGACCTCGACATCGAGACGCTGGACCTCTTGCAGGAGATCGTCACGGGCTTTGCCGGCACGGTGCTCCTCGTCAGCCACGACCGCGACTTCCTTGATCGCACCGTCACCTCGACCATCGCGCCGGCCGATCCGGAAAACCCGGATGGACGCTGGATCGAATATGCCGGCGGCTACACGGACATGATGGCCCAGCGCCGCGGCGCGATCGAGGAGAAGCGCAAGGCGGAAAAGGCCGAGAAGGCCAGGGCTGCCGATACGCCGGCCACCGGTCCCACGGACGGCAGGGGCAAGGCAAAACTCTCCTACAAGCAGAAATTCGCGCTGGAAAACCTGCCGAAGGAAATGGAGAAGGCGGAGAAGGAGATCGCCGCCCGCGAGGCGAAGATGGCCGATCCGAACCTCTTCGCCAAGGACCCCGCCACCTTCAATCGGCTCGCCGCCGAGATGGAGACGCTGCGCGACGGCCTGACGAAGATGGAAGAGGAATGGCTGGAGCTGGAAATGCTGCGCGAGGAGCTGGAGGGCTGA
PROTEIN sequence
Length: 609
LAPPILKLDDIFLSFGGTPLLSGASLQVEPGERICLVGRNGSGKSTLMKIAAGLAEAQSGEVFRHPSATIRYLHQAPDFDGYDTVAAYAEAGLGPSDDPYRVTYLLEHLGLSGNEDPKSLSGGEARRAALARVMAPEPDILLLDEPTNHLDLPTIEWLEGELQSTRSALVVISHDRRFLEKVSNATVWLDRGQSRRLNRGFAHFEAWRDEVLEAEELEQHKLGKAIEREEHWLRYGVTARRKRNMRRLGALHDLRARYRGHKGPQGSVQASASDAQESGKLVIEAEKITKSYGERTIVAPFSIRVHRGDCIGLVGPNGAGKTTLLKMLTGELAPDSGSVKLGTNLEIATLDQRREDLNLDDTLAHYLTDGRGETLLVNGEQRHVTGYMKEFLFQPEQARTPIRNLSGGERARLMLARILSRPTNLLILDEPTNDLDIETLDLLQEIVTGFAGTVLLVSHDRDFLDRTVTSTIAPADPENPDGRWIEYAGGYTDMMAQRRGAIEEKRKAEKAEKARAADTPATGPTDGRGKAKLSYKQKFALENLPKEMEKAEKEIAAREAKMADPNLFAKDPATFNRLAAEMETLRDGLTKMEEEWLELEMLREELEG*