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SCNpilot_expt_1000_bf_scaffold_4021_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4021_curated_1
BJP_08E140C01_Actinomycetales_70_11, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(2..982)
DNA (981bp) protein (327aa)
Tax=BJP_08E140C01_Actinomycetales_70_11
UPI0003CE67E7 related cluster n=1 Tax=unknown RepID=UPI0003CE67E7 rbh
polar amino acid ABC transporter inner membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_4021_curated_2
unknown

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comp(1055..1246)
DNA (192bp) protein (64aa)
Amino acid ABC transporter n=1 Tax=Arthrobacter sp. SJCon RepID=L8TQR9_9MICC
SCNpilot_expt_1000_bf_scaffold_4021_curated_3
unknown

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1535..1693
DNA (159bp) protein (53aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4021_curated_4
Sinorhizobium fredii, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2674..2925)
DNA (252bp) protein (84aa)
galM; aldose 1-epimerase; K01785 aldose 1-epimerase [EC:5.1.3.3]
Aldose 1-epimerase n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9A2C0_RHIFH
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1117943 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Rhizobium fredii (strain HH103) (Sinorhizobium fredii).;"
SCNpilot_expt_1000_bf_scaffold_4021_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2886..3659)
DNA (774bp) protein (258aa)
Aldose 1-epimerase GalM n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVB7_9RHIZ rbh
Aldose 1-epimerase {ECO:0000256|PIRNR:PIRNR005096}; EC=5.1.3.3 {ECO:0000256|PIRNR:PIRNR005096};; Galactose mutarotase {ECO:0000256|PIRNR:PIRNR005096}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
galM; aldose 1-epimerase; K01785 aldose 1-epimerase [EC:5.1.3.3] rbh
SCNpilot_expt_1000_bf_scaffold_4021_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3750..4202)
DNA (453bp) protein (151aa)
GCN5-like N-acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESS0_9RHIZ
GCN5-like N-acetyltransferase {ECO:0000313|EMBL:EYR79643.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Histone acetyl transferase
SCNpilot_expt_1000_bf_scaffold_4021_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4206..5129)
DNA (924bp) protein (308aa)
Homoserine O-succinyltransferase {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084556}; EC=2.3.1.46 {ECO:0000256|HAMAP-Rule:MF_00295, ECO:0000256|SAAS:SAAS00084596};; Homoserine O-transsuccinylase {ECO:0000256|HAMAP-Rule:MF_00295}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
homoserine O-succinyltransferase n=1 Tax=Rhizobium giardinii RepID=UPI0003735BCA rbh
metA; homoserine O-succinyltransferase; K00651 homoserine O-succinyltransferase [EC:2.3.1.46] rbh
SCNpilot_expt_1000_bf_scaffold_4021_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5335..7161)
DNA (1827bp) protein (609aa)
Holdfast attachment protein C {ECO:0000313|EMBL:EYR79640.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Holdfast attachment protein C n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EV69_9RHIZ rbh
ABC transporter; K15738 ATP-binding cassette, subfamily F, uup rbh
SCNpilot_expt_1000_bf_scaffold_4021_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7165..7830)
DNA (666bp) protein (222aa)
Thiamine pyrophosphokinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY07_9RHIZ rbh
Thiamine pyrophosphokinase {ECO:0000313|EMBL:EYR79639.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thiamine pyrophosphokinase; K00949 thiamine pyrophosphokinase [EC:2.7.6.2] rbh
SCNpilot_expt_1000_bf_scaffold_4021_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8038..8412)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CS39_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR78440.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4021_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8750..9505)
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EPK2_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR78439.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_4021_curated_12
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(9667..10041)
DNA (375bp) protein (125aa)
Aconitate hydratase n=1 Tax=Agrobacterium albertimagni AOL15 RepID=K2QZV9_9RHIZ
Aconitate hydratase {ECO:0000256|RuleBase:RU361275}; Short=Aconitase {ECO:0000256|RuleBase:RU361275};; EC=4.2.1.3 {ECO:0000256|RuleBase:RU361275};; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
acnA; aconitate hydratase 1 (EC:4.2.1.3)
Displaying 12 items

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